PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.6032s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 383aa MW: 42187.1 Da PI: 6.9312

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.6032s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	194	241	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Araha.6032s0002.1.p 194 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 241 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.69E-10	188	245	No hit	No description
SuperFamily	SSF47459	4.06E-17	188	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-17	190	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	194	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	196	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MENELYMNAG ASSHPPVMTS PSSSSAMLNW VSMETQPVNP SVSCNLFWEK STKQSIFHSA 60 LSSLVSSPTP SNSNFSGGEN VVIRELIGRL SNIGDIYGTP ASNGNVSGSS PALKPLVSHV 120 PASESSGEYS RKRKAKSKQN SPSTVSPSKE IEEKEDSDPK RCKKSEGNGD KTKSIDPYKD 180 YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL 240 QRQVEFLSMK LSSVNTRLDF NMDALLSKDI FPSSNNLMHH QQVLQLDSSA ETLLGDHHNN 300 NLQLNPDISS NNIINPLETS ETRSFISHLS TLAHFTDSIS QYSTFSEDDL TSIIHMGFSQ 360 NRLHELNHGS SNQVPSHMKA EL*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MENELYMNAG ASSHPPVMTS PSSSSAMLNW VSMETQPVNP SVSCNLFWEK STKQSIFHSA  60
LSSLVSSPTP SNSNFSGGEN VVIRELIGRL SNIGDIYGTP ASNGNVSGSS PALKPLVSHV  120
PASESSGEYS RKRKAKSKQN SPSTVSPSKE IEEKEDSDPK RCKKSEGNGD KTKSIDPYKD  180
YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL  240
QRQVEFLSMK LSSVNTRLDF NMDALLSKDI FPSSNNLMHH QQVLQLDSSA ETLLGDHHNN  300
NLQLNPDISS NNIINPLETS ETRSFISHLS TLAHFTDSIS QYSTFSEDDL TSIIHMGFSQ  360
NRLHELNHGS SNQVPSHMKA EL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.6032s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175369	0.0	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	0.0	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	0.0	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187390.1	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A178VI12	0.0	A0A178VI12_ARATH; Uncharacterized protein
STRING	AT3G07340.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.6032s0002.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]