PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.5892s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 210aa MW: 24120.9 Da PI: 3.9771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 72.1 | 1.4e-22 | 10 | 121 | 1 | 115 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp G+rF+P+d e+ v++L +k+ g ++++ ++ +e+ di++++P+dLp + +ee++wyf++++ k++ t +++ W tg++ Araha.5892s0003.1.p 10 LPIGMRFRPSDLEMAVYFLINKALGLTMKARTIPEEChDIFSIHPRDLP-GYGSEEEHWYFYCQKLKNQVTTTKSY-----NLWIPTGEE 93 699***************************77777779***********.6677899*******998776533333.....37******* PP NAM 90 kevlsk..kgelvglkktLvfykgrapk 115 ++vl+ ++elvg+k++++f ++++++ Araha.5892s0003.1.p 94 TDVLDPkkNDELVGIKRSFAFIENEEEE 121 ****98667778**********655444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-27 | 5 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.392 | 10 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-9 | 11 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGPTYRDMPL PIGMRFRPSD LEMAVYFLIN KALGLTMKAR TIPEECHDIF SIHPRDLPGY 60 GSEEEHWYFY CQKLKNQVTT TKSYNLWIPT GEETDVLDPK KNDELVGIKR SFAFIENEEE 120 EEASDYNNNG LSDEEEKPPQ YNWFLDEISL PLTVLDTDWV LCHIFNEKVK PEFVNLLPTI 180 VESESESDPS DVDDEEEDET VLPPPPASP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.5892s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870653.1 | 1e-115 | NAC domain-containing protein 41 | ||||
TrEMBL | D7MIZ3 | 1e-114 | D7MIZ3_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_3541 | 1e-114 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41090.1 | 2e-89 | NAC domain containing protein 95 |
Link Out ? help Back to Top | |
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Phytozome | Araha.5892s0003.1.p |