PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5826s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 164aa    MW: 17981 Da    PI: 6.5126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5826s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.4e-1795143153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          ++ykGVr ++ +g+W+AeI+dps    + r +lg+f tae+Aa+ +++a+++l
  Araha.5826s0007.1.p  95 KKYKGVRKKP-SGKWAAEIWDPSL---KSRRWLGTFLTAEMAARSYDEAARSL 143
                          59*****999.7*********944...4999*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.96E-2595143No hitNo description
Gene3DG3DSA:3.30.730.105.0E-2296144IPR001471AP2/ERF domain
SMARTSM003804.3E-2296159IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1496144IPR016177DNA-binding domain
PROSITE profilePS5103218.62496160IPR001471AP2/ERF domain
PfamPF008473.7E-996143IPR001471AP2/ERF domain
PRINTSPR003675.2E-797108IPR001471AP2/ERF domain
PRINTSPR003675.2E-7119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDHSENVPSN DQNENVTLVA PSPSSSYLTR DQEHEIMVSA LRQVISNSRA DASSSNLIAS  60
EGLPPPDAGP CPLCRITGCE GCTFQRPHRE IEKEKKYKGV RKKPSGKWAA EIWDPSLKSR  120
RWLGTFLTAE MAARSYDEAA RSLGHQQDVA KRTEKELNGG GDD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5826s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266401e-160AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankCP0026881e-160CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865580.15e-92LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF122
SwissprotQ38Q403e-80EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLD7MLD11e-92D7MLD1_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80022132e-93(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.11e-72ERF family protein