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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.5826s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 279aa MW: 32340 Da PI: 8.9862 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.8 | 1.6e-26 | 158 | 207 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl Araha.5826s0006.1.p 158 NSLSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSL 207 67999******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.69 | 143 | 227 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.8E-22 | 160 | 207 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MADQNPLMIW SEANNYESFL QEDIFSFLDQ SLSIDPHSSF INPFKDFQTQ TWFSFQDSIV 60 NPISTTFAAD HTFLASLDLE AISSTFSLDI MSGWWNENNG NYNNQVEPIL DDISRTNTMG 120 DPKMEKRLHE DVNTTIKEKT SQKRIIMKRR YREDGVINSL SREMMKQYFY MPITKAAKEL 180 NIGVTLLKKR CRELGIPRWP HRKLTSLNAL IANLKDLLGN TEGKTPKSKL RNALELLEME 240 KKMIEEVPDL EFGDKTKRLR QACFKAKYKQ RRLFSSSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.5826s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 1e-162 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | CP002688 | 1e-162 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871493.1 | 0.0 | protein RKD3 | ||||
Swissprot | Q9FGD1 | 0.0 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | D7KT00 | 0.0 | D7KT00_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_2000886 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-169 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.5826s0006.1.p |
Publications ? help Back to Top | |||
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