PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.57496s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 16882.3 Da PI: 8.3831 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.6 | 1.5e-20 | 15 | 128 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 +GfrF+P++eel+ +yL +k+ + ++ +++ +iy Pw+L+++ ++ e +ew++F+k+ +nr++k Wkatg Araha.57496s0006.1.p 15 VGFRFNPSEEELILDYLLPKLGFYQPKTIYLLEDKdEIYAKVPWRLKHT-ENgifEPNEWFYFVKK---------TNRKVK--GWKATG 91 7*********************999888666887757*********842.222457789*999986.........456545..4***** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 k+vlsk +g+++g k+ fy +ge++ W+m ey+ Araha.57496s0006.1.p 92 GLKDVLSKkNGKVIGKKRNRSFY----VEGERSGWTMTEYS 128 ******9978899**********....78999********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-25 | 5 | 139 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.099 | 13 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 15 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSMVEEFYDE EEELVGFRFN PSEEELILDY LLPKLGFYQP KTIYLLEDKD EIYAKVPWRL 60 KHTENGIFEP NEWFYFVKKT NRKVKGWKAT GGLKDVLSKK NGKVIGKKRN RSFYVEGERS 120 GWTMTEYSSI GNQNQLLCHL KGP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.57496s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB012246 | 1e-132 | AB012246.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7. | |||
GenBank | AC051626 | 1e-132 | AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence. | |||
GenBank | BT029319 | 1e-132 | BT029319.1 Arabidopsis thaliana At5g18300 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-132 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879104.1 | 1e-102 | NAC domain-containing protein 68 | ||||
TrEMBL | D7LXT7 | 1e-100 | D7LXT7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__1837__AT5G18300.1 | 1e-101 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 5e-78 | NAC domain containing protein 88 |
Link Out ? help Back to Top | |
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Phytozome | Araha.57496s0006.1.p |