PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.57242s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 360aa    MW: 41209.4 Da    PI: 8.454
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.57242s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.14.2e-27264345185
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           rW+++ev+aLi  r+++ee+ + +  k++ W+e+s++m+erg+ers+k+Ckekwen+nk+y++++eg +k+ +e+s+t +yf++l
  Araha.57242s0001.1.p 264 RWPQEEVQALISTRSDVEEKTGIN--KGAIWDEISARMKERGYERSAKKCKEKWENMNKYYRRVTEGGGKQ-PEHSKTRSYFEKL 345
                           8******************99988..99*****************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.03E-5262347IPR009057Homeodomain-like
PfamPF138372.9E-20263345No hitNo description
Gene3DG3DSA:1.10.10.606.2E-5263319IPR009057Homeodomain-like
CDDcd122039.77E-23263326No hitNo description
PROSITE profilePS500907.503264319IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
SRQSGSHGND DALATLADLA SPPQKLKPIR CGVKLPSEDR HPLDILAGTL DRLPEMGFGC  60
FEAPLGSKIA DVEQSGQLTR GFSKDDDDSL PLQMEFQARN RISWDGLSLS SSVDSDSDSS  120
SDVRKTVTGK RKRETRVKLE HFLEKLVGSM MKRQEKMHNQ LIKVMEKMEG ERIRREEAWR  180
QQEIERMIQN EEARKQELAR SLSLISFIRS VIGDEIEIPK HFEFPQPLQQ ILPEQCKDEK  240
CEPAQTEKEM KFRYSSGSGS SGRRWPQEEV QALISTRSDV EEKTGINKGA IWDEISARMK  300
ERGYERSAKK CKEKWENMNK YYRRVTEGGG KQPEHSKTRS YFEKLGNFYK TNSSGEREK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.57242s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256280.0AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865109.10.0trihelix transcription factor GTL1
TrEMBLD7MP230.0D7MP23_ARALL; Predicted protein
STRINGAl_scaffold_0008_210.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.10.0Trihelix family protein