PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.5618s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 81aa MW: 9096.59 Da PI: 9.1585 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.7e-11 | 1 | 43 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +E+ RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq Araha.5618s0017.1.p 1 MEQLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 43 69********************55......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.237 | 1 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-15 | 1 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.63E-10 | 1 | 47 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.5E-15 | 1 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-8 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-10 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MEQLRRERIA ERMKSLQELV PNGNKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAASV 60 SSQISEVIST TFPSFLQFFL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.5618s0017.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493711 | 3e-86 | AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980. | |||
GenBank | AF488601 | 3e-86 | AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018462686.1 | 1e-38 | PREDICTED: transcription factor bHLH69-like | ||||
Swissprot | Q9ZUG9 | 2e-37 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A1J3E7K4 | 3e-37 | A0A1J3E7K4_NOCCA; Transcription factor bHLH69 (Fragment) | ||||
TrEMBL | A0A1J3HQ85 | 3e-37 | A0A1J3HQ85_NOCCA; Transcription factor bHLH69 (Fragment) | ||||
TrEMBL | A0A1J3JKV4 | 3e-37 | A0A1J3JKV4_NOCCA; Transcription factor bHLH69 (Fragment) | ||||
TrEMBL | M4D433 | 3e-37 | M4D433_BRARP; Uncharacterized protein | ||||
STRING | Bra011237.1-P | 6e-38 | (Brassica rapa) | ||||
STRING | XP_006412645.1 | 7e-37 | (Eutrema salsugineum) | ||||
STRING | XP_010438100.1 | 5e-37 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 6e-40 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Araha.5618s0017.1.p |
Publications ? help Back to Top | |||
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