PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5599s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 326aa    MW: 36791.3 Da    PI: 8.0365
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5599s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.5e-34872271128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                          lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  Araha.5599s0009.1.p  87 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVSt 172
                          799***********9.89*****999956644322..22222333336**********.566677888******************7333 PP

                  NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Araha.5599s0009.1.p 173 deeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 227
                          45444788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3681246IPR003441NAC domain
PROSITE profilePS5100532.75887246IPR003441NAC domain
PfamPF023651.3E-1488227IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MYREISKIRR MSWCDGSDDN YDLNLERVSN IDHPSVQLKD QSQSCVTSGP DSKINVETPI  60
MSTCPSCGHK IHHQDDQVGG IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLHPLID  120
EFIPTLEGEN GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV STDEEGHETR  180
WHKTGKTRPV LSQSGEAGFK KILVLYTNYG RQKKPEKTNW VMHQYHLGSS EDEKDGEPVL  240
SKVFYQTQPR QCAGSTEPKP KNLVNLNRFS YENIQAGFGY EHGSKSEETT QVIRELVVRE  300
GDGSCSFLSF TCDASKGKES FMKNQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5599s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890777.10.0NAC domain-containing protein 10
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLD7KCX10.0D7KCX1_ARALL; Uncharacterized protein
STRINGscaffold_103183.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10