PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5497s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8128.46 Da    PI: 10.2635
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5497s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171564150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k+ie +  r vt+skRrngi  K +ELS+LC+aeva + +s +gk y++ 
  Araha.5497s0002.1.p 15 KKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPYTFG 64
                         689*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-21772IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-19766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.698767IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-15929IPR002100Transcription factor, MADS-box
PfamPF003199.5E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MNPKKTKGKQ RITIKKIEKD EDRLVTLSKR RNGIYTKLSE LSILCGAEVA FLGYSCSGKP  60
YTFGSPSFQA VAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5497s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224552e-90AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBankAY1412442e-90AY141244.1 Arabidopsis thaliana MADS-box protein AGL64 mRNA, complete cds.
GenBankCP0026842e-90CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867367.11e-46agamous-like MADS-box protein AGL29
RefseqXP_020867368.11e-46agamous-like MADS-box protein AGL29
TrEMBLD7KEP01e-44D7KEP0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10026602e-45(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.15e-49AGAMOUS-like 64