PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5176s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 344aa    MW: 39228.7 Da    PI: 9.7934
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5176s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.3e-3255108255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Araha.5176s0001.1.p  55 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 108
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75951111IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2951109IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1453109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2255110IPR006447Myb domain, plants
PfamPF002491.2E-956107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MIPSMEGGGK TNREEEEEAE KEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT  60
PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK SHLQMYRSKK IDDQGQAIAD  120
HKHLFETSTD RNIYKLSQLP MFRGYNHDHD SPFRYGSKFS NASLWNSSSH GTDRSLIEQI  180
RPGLIRSSSV SNNIRGSEYW TNNRSFKNIY SSSISNHLPK LRHDHQERTN SVTFNSMQGH  240
SRTFQKFHIG VEESTNHSYF SKTTGKRNAS TSIDLDLDLS LKLRQPEKTI LEETETAATT  300
TDQTLSLSLC PGSSSWKKNR LIKKDEEDRT VKIGQASTLD LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5176s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176890.0AK117689.1 Arabidopsis thaliana At2g38300 mRNA for unknown protein, complete cds, clone: RAFL17-35-G17.
GenBankBT0049730.0BT004973.1 Arabidopsis thaliana clone U50495 unknown protein (At2g38300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885832.10.0uncharacterized protein LOC9317643 isoform X2
TrEMBLA0A178VYP60.0A0A178VYP6_ARATH; Uncharacterized protein
TrEMBLQ8GYE40.0Q8GYE4_ARATH; Myb-like HTH transcriptional regulator family protein
STRINGAT2G38300.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.10.0G2-like family protein