PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5052s0042.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 374aa MW: 43489.7 Da PI: 4.055

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5052s0042.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.4	1.7e-16	5	124	2	114
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrk..nr.atksgyWka 85 p+G rF P+d lv +yL++ ve+k+ ++ i+++d+y+ ePw+Lp+ v++ ++k wy+F++ k+ ++ +rk r + g+W++ Araha.5052s0042.1.p 5 PVGSRFVPNDLGLVRFYLRNMVERKQSSF---ITTMDVYDDEPWHLPH-VNNplfKNKVWYYFVPLTKRGSSVQRKvpGReGSEGGTWRS 90 89*********************9666...9**********4.333355889***99987765544115645789*** PP NAM 86 tgkdkevlskkgel.....vglkktLvfykgrap 114 ++e+++ ++ + ++ Lv+ + r + Araha.5052s0042.1.p 91 NDGKEEIKDGHKMEyslhkSDEQQKLVLCRIRYK 124 9999999996333333333555555666554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-22	3	124	IPR003441	NAC domain
PROSITE profile	PS51005	19.434	4	169	IPR003441	NAC domain
Pfam	PF02365	1.0E-8	5	110	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MKSFPVGSRF VPNDLGLVRF YLRNMVERKQ SSFITTMDVY DDEPWHLPHV NNPLFKNKVW 60 YYFVPLTKRG SSVQRKVPGR EGSEGGTWRS NDGKEEIKDG HKMEYSLHKS DEQQKLVLCR 120 IRYKKKKKVN KIRRVNHQAH QTQVAENTNN ILQSQSVQEE ADLTGLPDEL EKMPEGQEDR 180 EEQEEVDLTD FPDELETMLE GQEDREEQEE VDLTDFPDEL ETMLEGQEDC EQQQEAELTG 240 FSDDPESMLL DGEEDRDVTQ QQQQQQQQEE EIPVPTPMQN NNNNNNVVMM MSNQQVQEEA 300 AGLIGLADDF AMTLLEGQED RDVTQQQQQQ QEEDDMMVLM DNPNDALALG NYEFVDLTWV 360 DEISDTIQRR EKY*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MKSFPVGSRF VPNDLGLVRF YLRNMVERKQ SSFITTMDVY DDEPWHLPHV NNPLFKNKVW  60
YYFVPLTKRG SSVQRKVPGR EGSEGGTWRS NDGKEEIKDG HKMEYSLHKS DEQQKLVLCR  120
IRYKKKKKVN KIRRVNHQAH QTQVAENTNN ILQSQSVQEE ADLTGLPDEL EKMPEGQEDR  180
EEQEEVDLTD FPDELETMLE GQEDREEQEE VDLTDFPDEL ETMLEGQEDC EQQQEAELTG  240
FSDDPESMLL DGEEDRDVTQ QQQQQQQQEE EIPVPTPMQN NNNNNNVVMM MSNQQVQEEA  300
AGLIGLADDF AMTLLEGQED RDVTQQQQQQ QEEDDMMVLM DNPNDALALG NYEFVDLTWV  360
DEISDTIQRR EKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5052s0042.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869775.1	0.0	NAC domain-containing protein 6
Swissprot	Q9LR74	1e-107	NAC6_ARATH; NAC domain-containing protein 6
TrEMBL	D7KD97	0.0	D7KD97_ARALL; Uncharacterized protein
STRING	scaffold_100350.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14026	9	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	5e-87	NAC domain containing protein 6

Link Out ? help Back to Top
Phytozome	Araha.5052s0042.1.p