PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4757s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 228aa    MW: 26084.4 Da    PI: 7.0476
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4757s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.4e-10127173349
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                          ++++ +r+++NRe+A+rsR RK+  ie+L++++  L   N++L+++l
  Araha.4757s0001.1.p 127 DDRKRKRMESNRESAKRSRMRKQRHIENLKDEANRLGLDNRELANRL 173
                          57899***********************************9999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-14125189IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-8126173No hitNo description
PROSITE profilePS502179.898127173IPR004827Basic-leucine zipper domain
PfamPF001704.0E-8128173IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-9129176No hitNo description
CDDcd147025.35E-16130177No hitNo description
PROSITE patternPS000360132147IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMSTVPAFSF TEPGLVNPIS DFQTGFTPWE LDCSDLFSAI HLEPVVPSPC SGESETGSVK  60
INTGFNGFDE SYIGSIKTNS GSDDSNLFHG VPSPQSDELD SDNTKIRINA TDHNRNKLNR  120
PVLQVTDDRK RKRMESNRES AKRSRMRKQR HIENLKDEAN RLGLDNRELA NRLRIVLYNI  180
ELMCTDNNRL LSEQEILRRR FLEMRQILIL RQLQQNPSLI INHQQMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4757s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0047860.0AC004786.3 Arabidopsis thaliana chromosome 2 clone T20K9 map CIC06C07, complete sequence.
GenBankBT0109290.0BT010929.1 Arabidopsis thaliana At2g22850 gene, complete cds.
GenBankBT0116490.0BT011649.1 Arabidopsis thaliana At2g22850 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880465.11e-157basic leucine zipper 43
TrEMBLD7LE491e-156D7LE49_ARALL; BZIP transcription factor family protein
STRINGscaffold_400242.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-145basic leucine-zipper 6