PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.47465s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 233aa    MW: 26233.9 Da    PI: 7.0215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.47465s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-095096354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+h+e+Er+RR+riN  +++Lr ll  +      K +Ka+ L k+v+ +k+L
  Araha.47465s0001.1.p 50 RNHKEAERKRRERINFHLNKLRNLLSCN-----SKTDKATLLAKVVQRVKEL 96
                          58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.2464796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-75096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.17E-95099No hitNo description
SuperFamilySSF474591.14E-1150105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1151106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-853102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.6E-4134203No hitNo description
CDDcd048730.00263135201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MQPEISDQIF YSFLTGGLCA SSTSSTTTSL FSPFAIEDKV AEDKALASLR NHKEAERKRR  60
ERINFHLNKL RNLLSCNSKT DKATLLAKVV QRVKELKQQT LEITDETFPS ETDEISVLNF  120
EDCSNDDGRR IIFKVSFCCE DRPDLLQDLM ETLKYLQMET LFADMTTVGG RTRNVLVVAA  180
DKEHPGVQSV NFLQNALKSL LERSSKSVMM GHGGGGEERL KRRRALDHII MV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.47465s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3909210.0AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878108.11e-147putative transcription factor bHLH107
SwissprotQ9LET01e-133BH107_ARATH; Putative transcription factor bHLH107
TrEMBLD7LVJ61e-146D7LVJ6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.5__2108__AT3G56770.11e-146(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]