PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4706s0030.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 218aa    MW: 25168.7 Da    PI: 8.336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4706s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.33.1e-2947136191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA  +GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vk+ek+g+w+vtk+e+eHnH+l 
  Araha.4706s0030.1.p  47 SFYDNYAICMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKREKSGNWVVTKFEKEHNHPLL 135
                          5********************************************99.9***************************************97 PP

                 FAR1  91 p 91 
                          p
  Araha.4706s0030.1.p 136 P 136
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2747136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEGNSLPEED VEMMENSDGM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYAICMGFVM  60
RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR AITREGCKAL IVVKREKSGN  120
WVVTKFEKEH NHPLLPLSPN VRRNPPLPQT PNEKDAKIRE LSAELSRERR RCTALQQQLD  180
MVLKEMEEHS NHLSTNINNV IQSVREIESN IFTKPLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4706s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040310.0BT004031.1 Arabidopsis thaliana clone RAFL15-31-E07 (R20864) unknown protein (At3g07500) mRNA, complete cds.
GenBankBT0050830.0BT005083.1 Arabidopsis thaliana clone U20864 unknown protein (At3g07500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882533.21e-141protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_020888952.11e-141protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLD7L6L31e-138D7L6L3_ARALL; Far-red impaired responsive family protein
STRINGXP_010464374.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135242227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-128FAR1 family protein