PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4706s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 218aa MW: 25168.7 Da PI: 8.336 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.3 | 3.1e-29 | 47 | 136 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vk+ek+g+w+vtk+e+eHnH+l Araha.4706s0030.1.p 47 SFYDNYAICMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKREKSGNWVVTKFEKEHNHPLL 135 5********************************************99.9***************************************97 PP FAR1 91 p 91 p Araha.4706s0030.1.p 136 P 136 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-27 | 47 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEGNSLPEED VEMMENSDGM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYAICMGFVM 60 RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR AITREGCKAL IVVKREKSGN 120 WVVTKFEKEH NHPLLPLSPN VRRNPPLPQT PNEKDAKIRE LSAELSRERR RCTALQQQLD 180 MVLKEMEEHS NHLSTNINNV IQSVREIESN IFTKPLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4706s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT004031 | 0.0 | BT004031.1 Arabidopsis thaliana clone RAFL15-31-E07 (R20864) unknown protein (At3g07500) mRNA, complete cds. | |||
GenBank | BT005083 | 0.0 | BT005083.1 Arabidopsis thaliana clone U20864 unknown protein (At3g07500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882533.2 | 1e-141 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_020888952.1 | 1e-141 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | D7L6L3 | 1e-138 | D7L6L3_ARALL; Far-red impaired responsive family protein | ||||
STRING | XP_010464374.1 | 1e-140 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-128 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.4706s0030.1.p |