PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.46505s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 139aa    MW: 14935.4 Da    PI: 10.895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.46505s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-1699139246
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                            y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a+
  Araha.46505s0001.1.p  99 TYRGVRMRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAH 139
                           69****998.**********854...6****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-2299139IPR001471AP2/ERF domain
PROSITE profilePS5103218.71699139IPR001471AP2/ERF domain
PfamPF008474.3E-1099139IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1599139IPR016177DNA-binding domain
SMARTSM003801.9E-1499139IPR001471AP2/ERF domain
CDDcd000181.96E-21100139No hitNo description
PRINTSPR003678.4E-11100111IPR001471AP2/ERF domain
PRINTSPR003678.4E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MERQINIESS VSQVTFIPSA ISAVSSSSSV TASASLSSSP TTSSSSSSSS TSSNFIEEDN  60
SKRKASRRSL SSLASVEDDD QTGGGGKRRK TSGGDKHPTY RGVRMRSWGK WVSEIREPKK  120
KSRIWLGTYP TAEMAARAH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.46505s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023881e-170AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAK2296161e-170AK229616.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL19-54-M23.
GenBankAY0870521e-170AY087052.1 Arabidopsis thaliana clone 31044 mRNA, complete sequence.
GenBankBT0085641e-170BT008564.1 Arabidopsis thaliana clone U50797 putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankBT0086771e-170BT008677.1 Arabidopsis thaliana clone RAFL19-54-M23 (R50797) putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankCP0026851e-170CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880148.11e-59ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLD7LBU13e-58D7LBU1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2683__AT2G44940.14e-59(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]