PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.46415s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 345aa    MW: 39730 Da    PI: 5.6931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.46415s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.5e-51111391128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                           +ppGfrFhPt+eel+++yL+kk+++ k++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat+ g+Wkat
  Araha.46415s0001.1.p  11 VPPGFRFHPTEEELLNYYLRKKISSIKIDL-DVIPDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKAT 98 
                           69****************************.9***************962433332455****************************** PP

                   NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           g+dk +++ +g  +g++ktLvfykgrap+g+k+dW+mheyr+
  Araha.46415s0001.1.p  99 GRDKIIYT-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRI 139
                           *******9.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-568175IPR003441NAC domain
PROSITE profilePS5100554.84911175IPR003441NAC domain
PfamPF023652.0E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLNYYLR KKISSIKIDL DVIPDVDLNK LEPWDIQEMC  60
KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYTNGDR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRID ESVLISSSGN DDVTVETCDV IGGDEGWVVC RVFKKKSLCK  180
NMISSPVKTS SFNEETIEQF LEVMGQSCKE EIISDPFLKL PHLECPNNTT ITNYQRLTDD  240
RVNNCHVSKF MDPSFVTSWA ALDRLVASQL NGPNSYSIPA VNETSQSPFH GLNRSGYCTG  300
LMPDYYIPEM DLWRYRFREN DDVIVQPIVP CVERQWITEM EEWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-47817714167NO APICAL MERISTEM PROTEIN
1ut4_B4e-47817714167NO APICAL MERISTEM PROTEIN
1ut7_A4e-47817714167NO APICAL MERISTEM PROTEIN
1ut7_B4e-47817714167NO APICAL MERISTEM PROTEIN
3swm_A5e-47817717170NAC domain-containing protein 19
3swm_B5e-47817717170NAC domain-containing protein 19
3swm_C5e-47817717170NAC domain-containing protein 19
3swm_D5e-47817717170NAC domain-containing protein 19
3swp_A5e-47817717170NAC domain-containing protein 19
3swp_B5e-47817717170NAC domain-containing protein 19
3swp_C5e-47817717170NAC domain-containing protein 19
3swp_D5e-47817717170NAC domain-containing protein 19
4dul_A4e-47817714167NAC domain-containing protein 19
4dul_B4e-47817714167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00015PBMTransfer from AT3G61910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.46415s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0843230.0AY084323.1 Arabidopsis thaliana clone 103969 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878421.20.0NAC domain-containing protein 66
SwissprotQ9M2740.0NAC66_ARATH; NAC domain-containing protein 66
TrEMBLD7LSQ70.0D7LSQ7_ARALL; Uncharacterized protein
STRINGscaffold_503455.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.10.0NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]