![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.45412s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 291aa MW: 31764.7 Da PI: 10.7097 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.3 | 1.9e-09 | 225 | 270 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r +r++kNRe+A rsR a++ eLe +v+ L+aeN +Lk + ++l+ Araha.45412s0002.1.p 225 RRHKRMIKNRESAARSR----AYTNELELEVAHLQAENARLKRQQDQLRM 270 699*************9....7********************99999975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-4 | 217 | 279 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-7 | 225 | 269 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.49E-21 | 225 | 275 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-8 | 225 | 270 | No hit | No description |
SuperFamily | SSF57959 | 1.78E-6 | 225 | 269 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MLSSAKHQRN HRVSATNKNQ TLNRVSSISP SSPSSSSSSS SSSSSSSSST SSSSPLPSQD 60 SHAQKRSLIT MEEVWKDINL ASIHHLNRHS PHPQHNHEPR FRSHNHQNQN PNSIFQDFLN 120 GSLNQEPAPT SLTTGSAPNN GDSTAVTALC SSPFPPPATV LSLNSGAGFE FLDNQDPLVT 180 SNSNLHSHHH LSNVQSFNTP FEALVPSTCF GKKRGQESNE GSGNRRHKRM IKNRESAARS 240 RAYTNELELE VAHLQAENAR LKRQQDQLRM AAAIQQPKKN TLQRSSTAPF * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.45412s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB105819 | 0.0 | AB105819.1 Arabidopsis thaliana FD mRNA for bZIP transcription factor, complete cds, cultiva:Landsberg erecta. | |||
GenBank | AB105820 | 0.0 | AB105820.1 Arabidopsis thaliana FD mRNA for bZIP transcription factor, complete cds, cultiva:Cvi-1. | |||
GenBank | AB105821 | 0.0 | AB105821.1 Arabidopsis thaliana FD mRNA for bZIP transcription factor, complete cds, cultiva:Nossen. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002869051.1 | 1e-178 | protein FD | ||||
Swissprot | Q84JK2 | 1e-164 | FD_ARATH; Protein FD | ||||
TrEMBL | D7MBR6 | 1e-177 | D7MBR6_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_453 | 1e-178 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-152 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.45412s0002.1.p |