PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4486s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 599aa    MW: 69078.3 Da    PI: 6.9582
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4486s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1691.2e-21101184189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          ++Yn YA+evGF+vr+++s  ++r++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ l+HnH l
  Araha.4486s0007.1.p 101 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVVEVILDHNHLL 184
                          69*****************************************9988.....999********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-19101184IPR004330FAR1 DNA binding domain
PfamPF105519.5E-22302394IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MERSESVDED VQASAYLEND EIRERDDPMS DGGCTLRIGE EALVCSSEHE IDVGFCQNEQ  60
RKSEEETTGE FDEQSGLHVE RKEFDAPAVG MEFESYDDAY NYYNCYATEV GFRVRVKNSW  120
FKRRSKEKYG AVLCCSSQGF KRINDVNRVR KETRTGCPAM IRMRQVDSKR WRVVEVILDH  180
NHLLGCKLYK SVKRTGTKRK CVSSPVSDAK MIKLYRAHVI DNGNNVNPNS TLNKKFQNSA  240
GSPDLLSLKR GDSTAIYNYF CRMQLTNPNF FYLMDVNDEG QLRNVFWADA FSKVSCSYFG  300
DVIFIDNSNI SGKFEIPLVT LTGVNHHGQT TLLSCGLLAG ETVESYHWLL KVWLGVMKCS  360
PQTIVTDRCK PLEAAISQVF PRSHHRFSLT HIMRKIPEKL GGLHNYDGVR KAFTKAVYET  420
LKVVEFEAAW GFMVHNFGVI DNEWLRSLYE ERAKWAPVYL KDTFFAGIAA AHPGETLNPF  480
FERYVHKQTP LKEFLDKYEL ALQKKHREET LGDLESLTLN TTELKTKCSF ETQLSRIYTR  540
DMFKKFQVEV EEMYSCFSTT QVHVDGPFVI FLVKERVQGE SNRREIRDFE VLYNRSVGE
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4486s0007.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0807750.0AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds.
GenBankAY1337760.0AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868132.10.0protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A178WP940.0A0A178WP94_ARATH; FRS6
STRINGAT1G52520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]