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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araha.44556s0002.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
M-type_MADS |
Protein Properties |
Length: 347aa MW: 39729.4 Da PI: 8.8101 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.44556s0002.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 78.8 | 3.8e-25 | 6 | 55 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+++++s++++++++R+++i+KKA ELS+LC++ev+vi++++ g+l+++++
Araha.44556s0002.1.p 6 FSSSSSRNSTSLTNRLKTIFKKALELSILCAIEVCVIYYGPGGELKTWPK 55
799*********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MKQASFSSSS SRNSTSLTNR LKTIFKKALE LSILCAIEVC VIYYGPGGEL KTWPKERETV 60 KDMALRYKEA RKRKKSLNLH EFLDKDNGKK KQKKNVKYHD WYPNFDYYSP HQLSQLNQSL 120 EQTLSTLQER LRFVEAQKQQ NTNLVHQSLT PPYLNQNQHL NPSKFSLYMY NHGDATLSQL 180 PLSASHSNQL TNYQNHLMQQ DLYGFGQNLC LENITNTNFQ RPYVSNTQDY SPLLSAQASA 240 VNNYGLNNHL MQKQELHGID QNVCMLSEII INNNNGLPHP NLSNTVPHEF SSDFQQNPYR 300 NTVGNTSFSQ DMFSSYDASS LHQASSLPSL HNIPNSYCFS DNSRLL*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 70 | 74 | RKRKK |
2 | 70 | 92 | RKRKKSLNLHEFLDKDNGKKKQK |
3 | 71 | 93 | KRKKSLNLHEFLDKDNGKKKQKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB011479 | 0.0 | AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5. |
GenBank | AY141224 | 0.0 | AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |