PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 347aa MW: 39729.4 Da PI: 8.8101

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.44556s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.8	3.8e-25	6	55	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s++++++++R+++i+KKA ELS+LC++ev+vi++++ g+l+++++ Araha.44556s0002.1.p 6 FSSSSSRNSTSLTNRLKTIFKKALELSILCAIEVCVIYYGPGGELKTWPK 55 799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.8E-4	1	56	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.47	1	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-13	8	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-15	10	85	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MKQASFSSSS SRNSTSLTNR LKTIFKKALE LSILCAIEVC VIYYGPGGEL KTWPKERETV 60 KDMALRYKEA RKRKKSLNLH EFLDKDNGKK KQKKNVKYHD WYPNFDYYSP HQLSQLNQSL 120 EQTLSTLQER LRFVEAQKQQ NTNLVHQSLT PPYLNQNQHL NPSKFSLYMY NHGDATLSQL 180 PLSASHSNQL TNYQNHLMQQ DLYGFGQNLC LENITNTNFQ RPYVSNTQDY SPLLSAQASA 240 VNNYGLNNHL MQKQELHGID QNVCMLSEII INNNNGLPHP NLSNTVPHEF SSDFQQNPYR 300 NTVGNTSFSQ DMFSSYDASS LHQASSLPSL HNIPNSYCFS DNSRLL*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MKQASFSSSS SRNSTSLTNR LKTIFKKALE LSILCAIEVC VIYYGPGGEL KTWPKERETV  60
KDMALRYKEA RKRKKSLNLH EFLDKDNGKK KQKKNVKYHD WYPNFDYYSP HQLSQLNQSL  120
EQTLSTLQER LRFVEAQKQQ NTNLVHQSLT PPYLNQNQHL NPSKFSLYMY NHGDATLSQL  180
PLSASHSNQL TNYQNHLMQQ DLYGFGQNLC LENITNTNFQ RPYVSNTQDY SPLLSAQASA  240
VNNYGLNNHL MQKQELHGID QNVCMLSEII INNNNGLPHP NLSNTVPHEF SSDFQQNPYR  300
NTVGNTSFSQ DMFSSYDASS LHQASSLPSL HNIPNSYCFS DNSRLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	74	RKRKK
2	70	92	RKRKKSLNLHEFLDKDNGKKKQK
3	71	93	KRKKSLNLHEFLDKDNGKKKQKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.44556s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB011479	0.0	AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.
GenBank	AY141224	0.0	AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002864952.1	0.0	agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	8e-75	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MTX2	0.0	D7MTX2_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.8__2584__AT5G65330.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65330.1	0.0	AGAMOUS-like 78

Link Out ? help Back to Top
Phytozome	Araha.44556s0002.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]