PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4414s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 256aa    MW: 27930 Da    PI: 7.1318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4414s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.3e-11138184555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Araha.4414s0003.1.p 138 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 184
                          999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17131198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-10131188No hitNo description
PROSITE profilePS5088815.18133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17134198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGKWKQWNWA SCVTPLHPVF TRSEHSGNKD VSAAEESTVT DLTAGWGGRK TRDLNSEDDS  60
SKMVSSSSSG NELKESGDKK RKLCGSESGN GDGSMRPEGE TSSGGGGGSK ATEQKNKPEP  120
PKDYIHVRAR RGQATDRHSL AERARREKIS EKMTALQDII PGCNKIIGKA LVLDEIINYI  180
QSLQRQVEFL SMKLEVVNSG ASTGPTIGVF PSGDLGTLPI DVHRTIYEQQ EANETRVSQP  240
EWLHMQVDGN FNRTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17281LKESGDKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4414s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721040.0AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845780.0AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230230.0AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877892.11e-173transcription factor bHLH79
SwissprotQ9LV171e-158BH079_ARATH; Transcription factor bHLH79
TrEMBLD7MMC61e-172D7MMC6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.8__2257__AT5G62610.11e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]