PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4235s0023.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 520aa    MW: 57552.6 Da    PI: 8.4004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4235s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05103125123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Araha.4235s0023.1.p 103 FVCEICNKGFQRDQNLQLHRRGH 125
                          89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.2E-6102125No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5102125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949103125IPR007087Zinc finger, C2H2
SMARTSM003550.017103125IPR015880Zinc finger, C2H2-like
PfamPF121718.3E-5103125IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM00355240145175IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.2E-6175200No hitNo description
SMARTSM00355180180200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MMNKDMLLHQ HHQPQQVQHQ QDENMSNLTS ASGDQASVSS GNITEASGSN YFPHHQQQQE  60
QQQQFFVPDS QPQKKRRNQP GNPDPESEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL  120
HRRGHNLPWK LKQRSNKEVI RKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW  180
KCDKCSKKYA VQSDCKAHSK TCGTKEYRCD CGTLFSRRDS FITHRAFCEA LAEETAREVV  240
IPQNQNNQPN PLLIHQSSSD PHHHQTQPTI NVSSSSSSSH NHNIINSLHF DTNNGTNNSN  300
SSNNHLHTFP MKKEQQSNDH IMNYHHSIPP WLAPQPHDLT SSNPNPSNGG VGGGLFSLAS  360
PAMSATALLQ KAAQMGSSKT PPLPPTTDYE RSTRNNNLTT TMAAMMTSPS GFISSNNNSQ  420
VLFQDYNASG FDHHGGEDAF DDTFGGFLRT NEATTAAGSE KSKSGGGEGL TRDFLGLRPL  480
MSHNEILSFA GLGNCINSSA SDQLHPKPWH GTQVGSNRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-31176244371Zinc finger protein JACKDAW
5b3h_F3e-31176244371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129142KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4235s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501294.10.0PREDICTED: protein indeterminate-domain 11-like isoform X3
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A1J3FCK10.0A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRINGXP_010501262.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]