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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4221s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 50212.2 Da PI: 9.6683 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.8 | 2.1e-06 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H Araha.4221s0008.1.p 68 FICEICNKGFKRDQNLQLHRRGH 90 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.19E-7 | 67 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-6 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.866 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.6E-5 | 68 | 90 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.011 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.19E-7 | 140 | 165 | No hit | No description |
SMART | SM00355 | 200 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MMMPDDHHHL SFPSYVLHQE HITPNPNPNP NHTSSNSAKR KRNLPGNPDP DAEVIALSPN 60 SLMATNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEQVKKKVY ICPEKSCVHH 120 DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF 180 SRKDSFITHR AFCDALAEEN ARFVSVPPAA AAAPAYLNNP PDGEVNLGNI NQNHQQRQVH 240 TTSSPLDQPG FNIHRNDIAF LGQTLPTNVF ASSSSPSPRS ASDSLQNLWH LQGQSSHQWL 300 LNENKNNNIL QRGISKNQEE CEIKNVISNG SLFSSEARNN TNNYNQDCGQ IASMSATALL 360 QKAAQMGSKR SSSSSSNNSK TFGLMTSIFN NKQGENIKTK EVDERGFTRD FLGVGSQHRP 420 WPLLMVNHNL PNSSPSATTD GTPTADMNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4221s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF428302 | 0.0 | AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds. | |||
GenBank | AJ621493 | 0.0 | AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene). | |||
GenBank | AY143936 | 0.0 | AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877396.1 | 0.0 | protein indeterminate-domain 9 | ||||
Swissprot | Q944L3 | 0.0 | IDD9_ARATH; Zinc finger protein BALDIBIS | ||||
TrEMBL | D7LNN7 | 0.0 | D7LNN7_ARALL; Zinc finger family protein | ||||
STRING | scaffold_501386.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.4221s0008.1.p |
Publications ? help Back to Top | |||
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