PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3948s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 807aa    MW: 91185.4 Da    PI: 6.4017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3948s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-08443487246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT+ Ed+ l++ +++    +W  Ia  +g++Rt+ qc  r+q 
  Araha.3948s0004.1.p 443 GPWTAAEDKNLLRIIEKKSLTDWVDIAVSLGTNRTPFQCLTRYQR 487
                          89*****************************************96 PP
2Myb_DNA-binding46.96.2e-15495539146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++ WT+eEd++l  av+++G ++W ++a+ +  gRt+ qc +rw k
  Araha.3948s0004.1.p 495 KKEWTAEEDDQLRAAVELFGDKDWQSVANVLK-GRTGTQCSNRWKK 539
                          679****************************9.***********98 PP
3Myb_DNA-binding513.2e-16546591147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g W+ eEd++ + av+++G+ +W++I++ ++ gRt  qc++rw++ 
  Araha.3948s0004.1.p 546 KGTWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTQTQCRERWLNC 591
                          799*****************************.***********996 PP
4Myb_DNA-binding39.81e-12598641146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+WT+eEd +l +a++++G   W+++a+++   Rt+ qc  rw  
  Araha.3948s0004.1.p 598 RGKWTEEEDGKLREAIAEHGYS-WSKVASKLS-CRTDSQCLRRWKR 641
                          89******************99.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.995343436IPR017877Myb-like domain
SMARTSM0071712347438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-7350366IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-7412449IPR009057Homeodomain-like
SuperFamilySSF466898.39E-13420485IPR009057Homeodomain-like
PROSITE profilePS500908.85437489IPR017877Myb-like domain
SMARTSM007171.0E-8441491IPR001005SANT/Myb domain
PfamPF002494.1E-7443487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-13450504IPR009057Homeodomain-like
SuperFamilySSF466891.73E-21474544IPR009057Homeodomain-like
PROSITE profilePS5129423.391490545IPR017930Myb domain
SMARTSM007172.9E-15494543IPR001005SANT/Myb domain
PfamPF002499.0E-14495539IPR001005SANT/Myb domain
CDDcd001673.41E-12497541No hitNo description
Gene3DG3DSA:1.10.10.604.5E-18505551IPR009057Homeodomain-like
SMARTSM007172.4E-13545594IPR001005SANT/Myb domain
PROSITE profilePS5129413.381546592IPR017930Myb domain
PfamPF002499.6E-15546591IPR001005SANT/Myb domain
CDDcd001673.84E-10548590No hitNo description
Gene3DG3DSA:1.10.10.608.4E-21552597IPR009057Homeodomain-like
SuperFamilySSF466896.11E-25572647IPR009057Homeodomain-like
PROSITE profilePS5129425.282593647IPR017930Myb domain
SMARTSM007171.6E-10597645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-18598642IPR009057Homeodomain-like
PfamPF002491.4E-11598642IPR001005SANT/Myb domain
CDDcd001675.13E-9600642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MNRNSLYEAD DDDDDDEEDD IGEDLEDLRR ACMVSDVNSD KFAAKTGSIE PDGGGGGEMP  60
SDSENEDDFE MLRSIKSQLA SSKDADLSSG PPIGLSLLSD SESEDDFEMI RSIKSQLALS  120
MDVSLPPIGL SDDDEDDAFE TLRAIRRRFS AYKNFGNFMN DSPGKKKQVH DLDNEPSSEI  180
LSRSNTCESF PDHGKSVVTV PDSEDVHEKT SIEPPDHLET CQVSAASSSF PKAALAFVDA  240
IRRNRAYQKF LRRKLVEIEA TIEQNEKHKK NVKIVKDFQA SCKRITKLAL SQKKDPRVEL  300
ISTRKSGPCD SSEGNDKKTS PLMLGPAENP CVANYRMALE KYPISVERRK WSTEENKKLA  360
KGLKQEVQKI LLSEAIEQSS DLEGSTYDID TINEAIGNLE ITPEMIRQFL PKINWDSLDI  420
KDRSAAECEA RWMSSEDPLI NHGPWTAAED KNLLRIIEKK SLTDWVDIAV SLGTNRTPFQ  480
CLTRYQRSLN PSILKKEWTA EEDDQLRAAV ELFGDKDWQS VANVLKGRTG TQCSNRWKKS  540
LRPTRKGTWS LEEDKRVKVA VTLFGSQNWH KISQFVPGRT QTQCRERWLN CLDPKVNRGK  600
WTEEEDGKLR EAIAEHGYSW SKVASKLSCR TDSQCLRRWK RLYPHQVALL QEARRLQKEG  660
SVGNFVDRES ERPSLVTGAI LALPEISLEP EPDSVTVKKK RKAKEKKSDA ERQPKRRRKA  720
LKKCSGDVCR QENETVCENE PNNGGEERLL ELECHNEILG NAKEKQRRKR KSVAETSNNN  780
TGLKKLTPRR KKVSAVVPIK NQDAPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-304046396159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-304046396159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1699717KRKAKEKKSDAERQPKRRR
2699718KRKAKEKKSDAERQPKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3948s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883109.10.0uncharacterized protein LOC9319175 isoform X2
TrEMBLD7L7Z60.0D7L7Z6_ARALL; MYB4R1
STRINGfgenesh2_kg.3__2002__AT3G18100.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1