PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.39122s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 22436.6 Da PI: 9.8718 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 5 | 27 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksF + L H+++H Araha.39122s0003.1.p 5 HKCKLCSKSFCNGRALGGHMKSH 27 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.7E-5 | 3 | 28 | No hit | No description |
Pfam | PF13912 | 6.2E-6 | 5 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.598 | 5 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSTRKKLG DSVYSSSSSS SDGKALVYGL 60 RENPRKSFRV FNPDPESSTV YNSETETEPE SGDPVKKRVR AYVSKKKKKA KSKSKKQKTS 120 HESPEPASSV SDGSPEQDLA MCLMMLSRDS RELEIKLKKP VFEEEEMKPE KIHFPELRRC 180 MIDLNLPPPQ DAEAVTVVSA I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 115 | KKKKKAKSKSKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.39122s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161544 | 0.0 | AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44. | |||
GenBank | BT004186 | 0.0 | BT004186.1 Arabidopsis thaliana clone RAFL15-32-J24 (R50122) unknown protein (At4g16610) mRNA, complete cds. | |||
GenBank | BT005392 | 0.0 | BT005392.1 Arabidopsis thaliana clone U50122 unknown protein (At4g16610) mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97341 | 0.0 | Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002868113.1 | 1e-122 | zinc finger protein ZAT9 | ||||
TrEMBL | D7MCD9 | 1e-120 | D7MCD9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__2648__AT4G16610.1 | 1e-121 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9510 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16610.1 | 1e-109 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.39122s0003.1.p |