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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araha.3868s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
MIKC_MADS |
Protein Properties |
Length: 245aa MW: 27801.3 Da PI: 7.4998 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.3868s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 94.3 | 5.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskR+ g+lKKA+ELSvLCdaev++iifs+ gklye+s+
Araha.3868s0001.1.p 9 KRIENKTTRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSNGGKLYEFSN 59
79***********************************************95 PP
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2 | K-box | 85.8 | 9e-29 | 82 | 168 | 11 | 97 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
++++ l+qel+kLk+++e+L r++R+l+GedLe +s+keLq Le+qLe +l+ R++K+++ +eq+eel++ke+el ++n++L+ +
Araha.3868s0001.1.p 82 LEDTQGLRQELTKLKSKYESLVRTHRNLVGEDLEGMSVKELQTLERQLEGALSATRKHKTQVAMEQMEELRRKERELGDINNKLKLE 168
567899******************************************************************************866 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 2.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.59 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-31 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.66E-39 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 6.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.0E-25 | 84 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.167 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0048481 | Biological Process | plant ovule development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGKVEVKR IENKTTRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFSN GGKLYEFSNV 60 GIGRTIERYY RCKNNFLDND TLEDTQGLRQ ELTKLKSKYE SLVRTHRNLV GEDLEGMSVK 120 ELQTLERQLE GALSATRKHK TQVAMEQMEE LRRKERELGD INNKLKLETE GHDFKGFQDL 180 LLNPVLTAGC STDFSLQSSH QNYISDCDVG YLLQIGFQQH YEQGEGSSVS KSNARSDAET 240 NFVQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | ATU20183 | 0.0 | U20183.1 Arabidopsis thaliana MADS-box protein AGL13 (AGL13) mRNA, complete cds. |