PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3696s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 556aa    MW: 60167 Da    PI: 7.6568
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3696s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15202261155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Araha.3696s0007.1.p 202 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 261
                          57*******************666664477446*************************98 PP
2AP246.31.1e-14306355355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Araha.3696s0007.1.p 306 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 355
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-17202271IPR016177DNA-binding domain
CDDcd000188.33E-23202271No hitNo description
PfamPF008473.2E-12202261IPR001471AP2/ERF domain
SMARTSM003804.1E-30203275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-16203270IPR001471AP2/ERF domain
PROSITE profilePS5103219.23203269IPR001471AP2/ERF domain
PRINTSPR003673.0E-6204215IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18304365IPR016177DNA-binding domain
CDDcd000186.08E-25304365No hitNo description
SMARTSM003803.7E-33305369IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18305363IPR001471AP2/ERF domain
PROSITE profilePS5103219.203305363IPR001471AP2/ERF domain
PfamPF008471.5E-9306355IPR001471AP2/ERF domain
PRINTSPR003673.0E-6345365IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MKNNNNKSSS SSSYDSSLSP SSSSSSHQSW LSFSLSNNNN FNSSSNPNLT SSTSDHHQHH  60
PSHLSLFQAF STSPVERQDG SPGVSTGDAT AVLSIYPGGP KLENFLGGGA TTTTTRSMQQ  120
VQSLGGVVFS SDLQPPLHPP SAAEIYDSEL KSIAASFLGN YSGGHSSEVS SVHKQQQQNP  180
LAVSEATPIP KKNVESFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG  240
GYDKEEKAAR AYDLAALKYW GPTTTTNFPI SNYESELEEM KHMTRQEFVA SLRRKSSGFS  300
RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT  360
NFDISRYDVK SIASCNLPVG GLMPKPSPAT AAAEKTVDLS ASDTPSLTTP SLTFNVATPV  420
HDHGGTFYHT GIPIKPDPAD HYWSSIFGFQ ANPKVEMRPI ATFGSDLHNP SPGYAIMPVI  480
QEGENNFGGS FVGSEVYNNH SAHSSPVSAT LLSSSTNGNE GYGGNINWIN NNISDSYQTA  540
KSNLSVLQTP VFGLE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3696s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856850.0AY585685.1 Arabidopsis thaliana clone at5g57390 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871747.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ30.0AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLD7MN970.0D7MN97_ARALL; AP2/EREBP transcription factor
STRINGfgenesh2_kg.8__1655__AT5G57390.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.10.0AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]