PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.36389s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 401aa    MW: 44604.8 Da    PI: 5.7352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.36389s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08215262455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Araha.36389s0002.1.p 215 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 262
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16209274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-9209266No hitNo description
PROSITE profilePS5088815.37211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-16211276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-6215262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDNELFMNTE FPPPPEMATH FEPPPSSSSA MMLNWALMDP NPPQDSSFLW EKSTEQQQQQ  60
SIFDSALSSL VSSPTPFNGR TNTNLPINNG NNIINNSGKL TRVSSTPALK ALISPEVAPG  120
GEFSRKRKSV PKGKSKENPI STASPSPSFS KTAEKKEEWG GKGSKSLEEK GGKRRREEED  180
EEEEGEGNKS NNTKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKIGER MKLLQDLVPG  240
CNKVTGKALM LDEIINYVQS LQRQVEFLSM KLSSVNDTRL DFNVDALVSK DVMIPSSNNR  300
LPEEGLQSKS SSHHQQQQQQ LNIYNNDNAQ LLSNNMMLQS PMNSLETSTL ARGFTHLPTL  360
TQFTDSISQY QMFSEEDLQS IVGMGVANPN NESQHMKIEL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.36389s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029450.0BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056370.0BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871306.10.0transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLD7MM360.0D7MM36_ARALL; Uncharacterized protein
STRINGCagra.13153s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-167bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]