PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3495s0016.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 133aa    MW: 14112.5 Da    PI: 5.14
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3495s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-163773135
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  Araha.3495s0016.1.p 37 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 73
                         ******999************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-143088No hitNo description
SMARTSM004011.4E-173184IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.7913192IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.4E-163578IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.86E-153682No hitNo description
PROSITE patternPS0034403764IPR000679Zinc finger, GATA-type
PfamPF003201.3E-133773IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MARNKGQFTS SKMTDGAYNS GTDQDSAQDD GHPEISCTHC GISSKCTPMM RRGPSGPRTL  60
CNACGLFWAN RGTLRDLSKK TEENQLALIK PDEGVSVADA ANNLNSEAAT VEEHTSMVSL  120
ANGDNSHLLD DH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3495s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860380.0AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873632.13e-92GATA transcription factor 25
RefseqXP_020873633.13e-92GATA transcription factor 25
SwissprotQ9LRH62e-88GAT25_ARATH; GATA transcription factor 25
TrEMBLD7M8T92e-89D7M8T9_ARALL; Zinc-finger protein expressed in inflorescence meristem
STRINGfgenesh2_kg.7__1832__AT4G24470.24e-90(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-91GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]