PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.3451s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 210aa MW: 24036.4 Da PI: 6.8069 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.3e-16 | 30 | 119 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk +ps + ++ ++++p kf++ g+ + + +tle++ g + ++kl ++ ++++++ +GW+eF++a+ +keg f++F+++++s+f Araha.3451s0004.1.p 30 FFKLVLPSTMKEN-MMRIPPKFVKLQGS--RLPEVVTLETPVGFKRSIKL--KRIGEEIWFHEGWSEFAEAHSIKEGHFLLFEYKDNSSF 114 6777766666655.6********66664..48889***************..********************************999999 PP ..EEEEE CS B3 91 elvvkvf 97 +v +f Araha.3451s0004.1.p 115 --RVIIF 119 ..77666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-24 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-22 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.18E-18 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-19 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-15 | 30 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MVTTRNTKAR VIPASHRRPP QDPGSPVKTF FKLVLPSTMK ENMMRIPPKF VKLQGSRLPE 60 VVTLETPVGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIKE GHFLLFEYKD NSSFRVIIFN 120 VSACEIEYPL DAVHISDSDD NIIEITGKEF SGTQGTRKND QSVDGGDTEH KSKKRPRDIE 180 FDKILLDVDM INSIQVLKEE EEDMRVYRG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.3451s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK229681 | 0.0 | AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20. | |||
GenBank | BT006139 | 0.0 | BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds. | |||
GenBank | BT008541 | 0.0 | BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887460.1 | 1e-141 | B3 domain-containing protein At3g18960 | ||||
Swissprot | Q84R27 | 1e-120 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | A0A178VGT7 | 1e-117 | A0A178VGT7_ARATH; Uncharacterized protein | ||||
STRING | Bostr.19424s0764.1.p | 1e-127 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-122 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.3451s0004.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|