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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.3440s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 41223.7 Da PI: 5.4922 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.7 | 8.9e-44 | 4 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+GfrF+Ptdee+v++yL++k +++ +++evi++vdi++++PwdLp k ++k+++ wyfFs ++ ky++g++++r t+sg+Wk+tgk Araha.3440s0004.1.p 4 PVGFRFRPTDEEIVDHYLRPKNLDDDtSHVDEVISTVDICSFDPWDLPsKsMIKSSDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGK 93 89******************9766663777889**************96347777888******************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++k ++e++g k++Lvf +++g+ktdWvmhey++ Araha.3440s0004.1.p 94 TMTIMRKrgNREKIGEKRVLVFK---NRDGSKTDWVMHEYHA 132 ******9877888*********7...78899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.1E-46 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.677 | 3 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-25 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MVNPVGFRFR PTDEEIVDHY LRPKNLDDDT SHVDEVISTV DICSFDPWDL PSKSMIKSSD 60 GVWYFFSVKE MKYNRGDQQR RRTNSGFWKK TGKTMTIMRK RGNREKIGEK RVLVFKNRDG 120 SKTDWVMHEY HATSLFPNQV MTYTICKVEF KGEETELSSS STGSEIEQIH SLIPLVNNSG 180 GSEGSSYSQE LQNPSQFSGF SDVHQEAQLD DATTSTEEWK TWLNDDGDEQ MNYIVNMRDD 240 RNDHRPQKPL TGVFIDDSSD DNDSDLQSPK TTSIETWSTC DSFASSNHRI DQIKTQQSPD 300 STIKLVSLTQ EVSQALGQGT EIGEQKLGQE TVKKKRANFV YRMIQRLVKK MQLCSSISRT 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-25 | 4 | 130 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-25 | 4 | 130 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-25 | 4 | 130 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-25 | 4 | 130 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
3swm_B | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
3swm_C | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
3swm_D | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
3swp_A | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
3swp_B | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
3swp_C | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
3swp_D | 2e-25 | 4 | 131 | 21 | 144 | NAC domain-containing protein 19 |
4dul_A | 2e-25 | 4 | 130 | 18 | 140 | NAC domain-containing protein 19 |
4dul_B | 2e-25 | 4 | 130 | 18 | 140 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00122 | DAP | Transfer from AT1G02230 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.3440s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493424 | 0.0 | AB493424.1 Arabidopsis thaliana At1g02240 mRNA for hypothetical protein, partial cds, clone: RAAt1g02240. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892093.1 | 0.0 | NAC domain-containing protein 4 | ||||
Swissprot | O81913 | 0.0 | NAC4_ARATH; NAC domain-containing protein 4 | ||||
TrEMBL | D7KB64 | 0.0 | D7KB64_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_137 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02230.1 | 0.0 | NAC domain containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.3440s0004.1.p |
Publications ? help Back to Top | |||
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