![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.3367s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 169aa MW: 18447.4 Da PI: 9.9464 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H Araha.3367s0001.1.p 87 HPCPICGVEFPMGQALGGHMRRH 109 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.21E-7 | 37 | 109 | No hit | No description |
Pfam | PF13912 | 8.6E-12 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.995 | 39 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.699 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-11 | 87 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MVARSEEIVK VEDTAAKCLM LLSRVGECGG YGGGEKRVFR CKTCLKEFSS FQALGGHRAS 60 HKKLINSNDS SLLGFLINKK TKTMTSHPCP ICGVEFPMGQ ALGGHMRRHR NEKASGTLVT 120 RSFLPETTTT MTTLKKSSSG KRVACLDFDL DSMESLVNWK LELGRTIS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.3367s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL355775 | 1e-177 | AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12. | |||
GenBank | CP002686 | 1e-177 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_190194.1 | 1e-100 | C2H2-type zinc finger family protein | ||||
Swissprot | Q9LX85 | 1e-101 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | D7LMV2 | 2e-93 | D7LMV2_ARALL; Uncharacterized protein | ||||
STRING | AT3G46080.1 | 1e-100 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-91 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.3367s0001.1.p |