PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.3365s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 302aa MW: 33481.6 Da PI: 9.2697

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.3365s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.5	1.9e-34	59	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+Ptd+e++ e+L+ kv+++ ++ e +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Araha.3365s0004.1.p 59 LPAGVKFDPTDQEVL-EHLEGKVRDDAkklhplID--EfirTIDGEnGICYTHPEKLP-GVNKDGTVRHFFHRPSKAYTTGTRKRRKVHt 144 799********99.99**99966654422..22223554445******.677788899**************7443 PP NAM 80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vls +g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l Araha.3365s0004.1.p 145 dsdvggETRWHKTGKTRPVLS-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200 455555788********.9*********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-38	53	219	IPR003441	NAC domain
PROSITE profile	PS51005	33.46	59	219	IPR003441	NAC domain
Pfam	PF02365	3.6E-15	60	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MTWCNDRSDV QTVERIIPSP AAPESPVASL PVSCHKTCPS CGHNFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLEHLEGKV RDDAKKLHPL IDEFIRTIDG ENGICYTHPE KLPGVNKDGT 120 VRHFFHRPSK AYTTGTRKRR KVHTDSDVGG ETRWHKTGKT RPVLSGGRVR GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GTSEEEKEGE LVVSKVFYQT QPRQCGGSAA ATAKDRPYLH 240 GLGGGRHLHY HLHHNNGNGK SNNGGGSAGA GEYYHNIPAL ISFNQTGIQN HLVHDSQPFI 300 P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.3365s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056658	0.0	DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010438444.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	0.0	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A087GHN2	0.0	A0A087GHN2_ARAAL; Uncharacterized protein
STRING	XP_010438444.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	0.0	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Araha.3365s0004.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]