PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32489s0002.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 304aa    MW: 34374.2 Da    PI: 7.7861
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32489s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.22.3e-2179157128
                   NAM  57 ewyfFskrdkkyatgkrknra............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +fF+k +++y+tg+rk+r+             ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Araha.32489s0002.2.p   7 SKHFFHKPSRAYTTGTRKRRKiiqtdhdsevtgSSETRWHKTGKTRPVMI-NGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 91 
                           569*****************889999999997766889************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.6211110IPR003441NAC domain
SuperFamilySSF1019415.1E-234110IPR003441NAC domain
PfamPF023654.1E-7991IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
VTRDGLSKHF FHKPSRAYTT GTRKRRKIIQ TDHDSEVTGS SETRWHKTGK TRPVMINGQQ  60
RGCKKILVLY TNFGKNRRPE KTNWVMHQYH LGINEEEREG ELVVSKIFYQ TQPRQCVSNI  120
HWSDNHGSKD MIGIGVGDEI SVAATLQTLG SGVGDIVSRV NMNPYTRGFD EGTAEASKGR  180
ENQRVYGTCE EVHNEILTSS TSSMSSHHMI HDHHNQHHQI GDRRDLHMSS SYPMTPTITS  240
RHDSIFHVTS TMPFQQQLRG RSSGSGLEDL IMGCTTATCI EDEHSSEANP QQNAEWLTFP  300
PFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32489s0002.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871932.10.0NAC domain-containing protein 101
TrEMBLA0A1P8B9R10.0A0A1P8B9R1_ARATH; NAC domain containing protein 99
STRINGfgenesh2_kg.8__1569__AT5G56620.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.11e-149NAC domain containing protein 99