PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.32090s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 130aa MW: 14490.5 Da PI: 8.7624 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 5 | 27 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cgk+F++ L H +H Araha.32090s0001.1.p 5 FKCETCGKVFKSYQALGGHRASH 27 89***********9999999888 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H Araha.32090s0001.1.p 54 HECPICFRVFTSGQALGGHKRSH 76 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.68E-7 | 4 | 76 | No hit | No description |
Pfam | PF13912 | 5.4E-12 | 4 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.655 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 5 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 54 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-11 | 54 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
NRGRFKCETC GKVFKSYQAL GGHRASHKKN KACMTKTEQV KTEYIHGVKE KRIHECPICF 60 RVFTSGQALG GHKRSHGSNI GAGRGLSVSQ IVQIDKEEEE GVSVKQRMID LNLPALNEED 120 ETSLVFDEW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.32090s0001.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074655 | 1e-151 | AY074655.1 Arabidopsis thaliana At2g45120/T14P1.7 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-151 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882791.1 | 2e-85 | zinc finger protein ZAT4 | ||||
Swissprot | Q9SHD0 | 1e-80 | ZAT4_ARATH; Zinc finger protein ZAT4 | ||||
TrEMBL | D7LBV6 | 4e-84 | D7LBV6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__2705__AT2G45120.1 | 6e-85 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1465 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 4e-83 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.32090s0001.1.p |