PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3134s0021.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 389aa    MW: 44477 Da    PI: 7.048
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3134s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.5e-201153345
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          +n   rq t++kRr+gi+KKA+ELS+LCd++v +++fs+ gk
  Araha.3134s0021.1.p 11 LQNMNGRQSTYAKRRHGIMKKAKELSILCDIDVVLLMFSPMGK 53
                         568888**********************************997 PP
2K-box16.34.1e-071341972481
                K-box  24 LkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                          L ++i+ Lq        R   + d+e++ s+ +LqqLe+ L +sl +i  +K  + + q ++l 
  Araha.3134s0021.1.p 134 LSEKIRFLQtqlsdIHTRLSYWTDVENIdSVDDLQQLEHSLRQSLAQIYGRKASMPRHQHRQLM 197
                          56666666655544445677788888885689********************999888877654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.974153IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-22178IPR002100Transcription factor, MADS-box
CDDcd001201.36E-21253No hitNo description
PRINTSPR004047.6E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-161253IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-163859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.145124223IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGRVKLKIKK LQNMNGRQST YAKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASLCIGK  60
HSFGEVIAKF AQLTPQERNL EFDITLNIYL FDFCLRLNRK LENLEALRKT FMKVNHDIDI  120
SKFLDRSTPT VEVLSEKIRF LQTQLSDIHT RLSYWTDVEN IDSVDDLQQL EHSLRQSLAQ  180
IYGRKASMPR HQHRQLMSSK CKNQLQTEIY IDFGMEMEQQ LENFSWVRTD ENMNVPLKEE  240
DPNMQLHQMY RDITCSASSS LGNYSGFFSK SSDISTPKLE TGSIPGTSAD PNLQISNLSF  300
LNDQKLQQLA EWNLLGSPAD YYVSQILEAS YKPQFGGKNN CASSETLPYV AVFDDPLYFW  360
VNNGLLIIHL LQNSVITGLV LLTVSEHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3134s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941120.0AB094112.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, partial cds.
GenBankAB1150130.0AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889921.10.0agamous-like MADS-box protein AGL30
TrEMBLD7KXG60.0D7KXG6_ARALL; Predicted protein
STRINGAl_scaffold_0002_16150.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.10.0AGAMOUS-like 94