PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.3091s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 212aa MW: 23480.1 Da PI: 9.3903 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 61 | 82 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk F ++ L H++ H Araha.3091s0008.1.p 61 ECQYCGKEFANSQALGGHQNAH 82 7******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.38E-6 | 59 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 59 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.801 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MSISPTMSRT GESSSGSSSD KTIKLFGFDL ISGNRSPEIT TAESVSSSTN TTSLTVIKRL 60 ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS IGYYLTSHQQ PITTSFQRQY 120 NTPSYCAFSS MHVNNNQMGV YNEEWSSRSS QISFGNKDTC QDLNEQSGEM GKLYGVLPNM 180 IQFQRDLTSR SDQMRSIKSL DLHLGFAGDS A* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22301962, ECO:0000269|PubMed:22762888}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.3091s0008.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cytokinin and ethylene. {ECO:0000269|PubMed:22762888}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493446 | 0.0 | AB493446.1 Arabidopsis thaliana At1g10480 mRNA for hypothetical protein, partial cds, clone: RAAt1g10480. | |||
GenBank | AC007067 | 0.0 | AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence. | |||
GenBank | ATHZFPE | 0.0 | L39648.1 Arabidopsis thaliana zinc finger protein (ZFP5) mRNA, complete cds. | |||
GenBank | AY086302 | 0.0 | AY086302.1 Arabidopsis thaliana clone 23664 mRNA, complete sequence. | |||
GenBank | BT024840 | 0.0 | BT024840.1 Arabidopsis thaliana At1g10480 gene, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020869426.1 | 1e-155 | zinc finger protein 5 | ||||
Swissprot | Q39264 | 1e-122 | ZFP5_ARATH; Zinc finger protein 5 | ||||
TrEMBL | D7KKR8 | 1e-149 | D7KKR8_ARALL; Zinc finger protein 5, ZFP5 | ||||
STRING | fgenesh2_kg.1__1115__AT1G10480.1 | 1e-150 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7325 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10480.1 | 1e-112 | zinc finger protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.3091s0008.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|