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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.3091s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 16874.3 Da PI: 9.3066 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 6.8e-12 | 24 | 112 | 5 | 83 |
-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 5 ltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 l+ sd +++l+lpk+ +e++ + +++++++d ++ s++v+l + + g+y+l+kGW+ +++gLk+gD + Araha.3091s0005.1.p 24 LSDSDLCYRAQLYLPKQEMEHFilpemendlvrK--LGAGVEVKVRDIDSvndDSYTVRL--KVRNGQYYLEKGWRLIKNDKGLKTGDHI 109 6678888999*********777998877766432..237899****9999999*******..999999********************87 PP EEE CS B3 81 vFk 83 + Araha.3091s0005.1.p 110 GLF 112 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.5E-11 | 21 | 128 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-13 | 23 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-10 | 23 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-14 | 24 | 125 | No hit | No description |
Pfam | PF02362 | 1.1E-8 | 25 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MAKNNDINLE LSLSQYVEDD LWKLSDSDLC YRAQLYLPKQ EMEHFILPEM ENDLVRKLGA 60 GVEVKVRDID SVNDDSYTVR LKVRNGQYYL EKGWRLIKND KGLKTGDHIG LFWDKLTGEF 120 KFKHFESKSI VKRVLLRHRR RN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.3091s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493445 | 1e-110 | AB493445.1 Arabidopsis thaliana At1g10455 gene for hypothetical protein, partial cds, clone: RAAt1g10455. | |||
GenBank | AC007067 | 1e-110 | AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence. | |||
GenBank | AF170550 | 1e-110 | AF170550.1 Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete cds. | |||
GenBank | CP002684 | 1e-110 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889808.1 | 6e-90 | B3 domain-containing protein At1g10455 | ||||
Swissprot | Q9XIK5 | 1e-70 | Y1045_ARATH; B3 domain-containing protein At1g10455 | ||||
TrEMBL | D7KKR3 | 1e-88 | D7KKR3_ARALL; Uncharacterized protein | ||||
STRING | scaffold_101108.1 | 2e-89 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19929 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 3e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.3091s0005.1.p |