PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.30893s0007.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 758aa MW: 87377.6 Da PI: 8.0524

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.30893s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.2e-31	50	141	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++++HnHe Araha.30893s0007.1.p 50 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHE 138 9*************************************999888555667889******************************** PP FAR1 89 lap 91 l+p Araha.30893s0007.1.p 139 LVP 141 *86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-29	50	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-32	262	354	IPR018289	MULE transposase domain
Pfam	PF04434	1.9E-12	530	576	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.608	546	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MLDSPIMPCG NGLVGNSGNY FPNQEEPCDL LDLEPFDGLE FESEEAAKAF YNSYARRIGF 60 STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN MNEKRTKDRE IKRPRTITRV GCKASLSVKM 120 QDSGKWLVSG FVKDHNHELV PPDQVHCLRS HRQISGPAKT LIDTLQAAGM GPRRIMSALI 180 KEYGGISKVG FTEVDCRNYM RNNRQKSIEG EIQLLLDYLR QMNADNPNFF YAVQGSDDQS 240 VGNVFWADPK ARMDFTYFGD TVTFDTTYRS NRYRLPFAPF TGVNHHGQPI LFGCAFIINE 300 TEASFLWLFN TWLAAMSTHP PVSITTDHDA VIRAAIMQVF PGARHRFCKW HIFKKCQEKL 360 SHVFLKHPSF ESDFHKCVNM TESVEDFESC WFSLLDKYEL RDHEWLQAIY SDRRQWVPVY 420 LRDTFFAEMS LTQRSDSINS YFDGYINAST NLSQFFKLYE KALESRLEKE VKADYDTMNS 480 PPVLKTPSPM EKQASELYTR KLFMRFQEEL VGTLTFMASK ADDDGDLVTY QVAKYGEALK 540 AHFVKFNVLE MRANCSCQMF EFSGIICRHI LAVFRVTNLL TLPPYYILKR WTRNAKSSVI 600 FDDYNLHAYA NYLESHTVRY NTLRHKASNF VQEAGKSLYT CDVAVVALQE AAKTVSLAMN 660 KEVRRTMANR HFKASSVTDG KRMCCNEDCQ QEVLVQPEPE DEMDKKINQL RNELELANRK 720 CEAYRTNLLS VLKEMEEQKL QVSIKVQNIK ISLKDNL*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MLDSPIMPCG NGLVGNSGNY FPNQEEPCDL LDLEPFDGLE FESEEAAKAF YNSYARRIGF  60
STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN MNEKRTKDRE IKRPRTITRV GCKASLSVKM  120
QDSGKWLVSG FVKDHNHELV PPDQVHCLRS HRQISGPAKT LIDTLQAAGM GPRRIMSALI  180
KEYGGISKVG FTEVDCRNYM RNNRQKSIEG EIQLLLDYLR QMNADNPNFF YAVQGSDDQS  240
VGNVFWADPK ARMDFTYFGD TVTFDTTYRS NRYRLPFAPF TGVNHHGQPI LFGCAFIINE  300
TEASFLWLFN TWLAAMSTHP PVSITTDHDA VIRAAIMQVF PGARHRFCKW HIFKKCQEKL  360
SHVFLKHPSF ESDFHKCVNM TESVEDFESC WFSLLDKYEL RDHEWLQAIY SDRRQWVPVY  420
LRDTFFAEMS LTQRSDSINS YFDGYINAST NLSQFFKLYE KALESRLEKE VKADYDTMNS  480
PPVLKTPSPM EKQASELYTR KLFMRFQEEL VGTLTFMASK ADDDGDLVTY QVAKYGEALK  540
AHFVKFNVLE MRANCSCQMF EFSGIICRHI LAVFRVTNLL TLPPYYILKR WTRNAKSSVI  600
FDDYNLHAYA NYLESHTVRY NTLRHKASNF VQEAGKSLYT CDVAVVALQE AAKTVSLAMN  660
KEVRRTMANR HFKASSVTDG KRMCCNEDCQ QEVLVQPEPE DEMDKKINQL RNELELANRK  720
CEAYRTNLLS VLKEMEEQKL QVSIKVQNIK ISLKDNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.30893s0007.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872830.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A178UY79	0.0	A0A178UY79_ARATH; FRS5
STRING	Bostr.25542s0007.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Araha.30893s0007.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]