PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.30351s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 321aa MW: 37458.8 Da PI: 6.865 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.6 | 8.5e-33 | 62 | 154 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k++ei+ed ++ ++sws + +sf+++d+ +f++++LpkyFkh+nf+SF+RQLn YgFkkv++++ weF+++ F+ gk Araha.30351s0001.1.p 62 FLRKTFEIVEDTVTDPVVSWSLTRKSFIIWDSYDFSENLLPKYFKHKNFSSFLRQLNSYGFKKVDSDR---------WEFANEGFQGGK 141 9********************888*****************************************999.........************ PP XXXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkkse 103 k ll++ikr++++ Araha.30351s0001.1.p 142 KYLLKNIKRRSKS 154 **********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.9E-47 | 58 | 151 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-28 | 59 | 151 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.2E-32 | 60 | 151 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.2E-28 | 62 | 151 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-16 | 62 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-16 | 100 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 101 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-16 | 113 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MTAIPNVVDI ESSSSLCQET VSPSVVETAK LDHVVSLIKE EEDDVVSLGF WKLHEIGLIT 60 PFLRKTFEIV EDTVTDPVVS WSLTRKSFII WDSYDFSENL LPKYFKHKNF SSFLRQLNSY 120 GFKKVDSDRW EFANEGFQGG KKYLLKNIKR RSKSTKCNKE ARSTETEVEL LKEEQSPMRL 180 EMLKLKQQQE ESQHQMVTVQ EKIHGFESEQ QHMLSFFAKL VKDQRFVERL LKKRKMKQHR 240 ELQAAEFVKK LKLLQDQETQ KNLLDVENHL VIREFMAMAE TQHNPERDIL MNNESGNRRC 300 QLNTEDLLVD GGSMEAKHVT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-19 | 59 | 155 | 17 | 124 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 150 | LKNIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.30351s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065226 | 0.0 | AY065226.1 Arabidopsis thaliana unknown protein (At5g54070) mRNA, complete cds. | |||
GenBank | AY096552 | 0.0 | AY096552.1 Arabidopsis thaliana unknown protein (At5g54070) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871828.1 | 0.0 | heat stress transcription factor A-9 | ||||
Swissprot | Q9LVW2 | 0.0 | HSFA9_ARATH; Heat stress transcription factor A-9 | ||||
TrEMBL | D7MTN9 | 0.0 | D7MTN9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__1300__AT5G54070.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7498 | 19 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54070.1 | 0.0 | heat shock transcription factor A9 |
Link Out ? help Back to Top | |
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Phytozome | Araha.30351s0001.1.p |