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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2865s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25202.4 Da PI: 10.3386 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.8 | 2.9e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien++ r+ tf kR++g+lKKA+EL +LC++ ++vi+ s Araha.2865s0001.1.p 10 FIENETARKSTFKKRKKGVLKKAHELGTLCGVPICVIVNSA 50 8*************************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.446 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.0E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-23 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-17 | 10 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTRQKVKMAF IENETARKST FKKRKKGVLK KAHELGTLCG VPICVIVNSA YEQNPEVWPS 60 RETANKVVSQ WKTMSVMDKT KKMVNQETFL QQRITKATES WKKLRKENKE LEMKNVMFDC 120 LSGKTLVSRI EKSELRDFVY VIEQYLKDVI HRIEILKRNE ESSSALVPVA ATTTSSVMPV 180 VEMGSSSVGF YDKIRDQIQS TLNMKQTTKD LDLNKKQW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 25 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2865s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB830687 | 0.0 | AB830687.1 Arabidopsis halleri subsp. gemmifera AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e055. | |||
GenBank | AB830688 | 0.0 | AB830688.1 Arabidopsis halleri subsp. halleri AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e056. | |||
GenBank | AB830689 | 0.0 | AB830689.1 Arabidopsis halleri subsp. tatrica AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e057. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879188.1 | 1e-157 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6AXX2 | 1e-158 | S6AXX2_ARAHG; Agamous-like MADS-box protein AGL35 | ||||
STRING | AT5G26630.1 | 1e-131 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 1e-135 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.2865s0001.1.p |