PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.27186s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 313aa    MW: 34385.3 Da    PI: 8.2672
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.27186s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.96.7e-16114168357
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                           ++k+ rr+ +NRe+ArrsR+RK++++  Le+ v eL++e ++L k+l++++ +++
  Araha.27186s0002.1.p 114 DVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNELKGEHSTLLKQLSNMNHKYD 168
                           78******************************************99999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-19112176IPR004827Basic-leucine zipper domain
PfamPF001707.6E-15114168IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208114169IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.72E-12115167No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-12116167No hitNo description
PROSITE patternPS000360119134IPR004827Basic-leucine zipper domain
PfamPF124984.9E-12183268IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
AAAPTTTVIV DSDDYHHRVL KDKLETECAA VRVGSVKPED STSSPETQFQ PVQSSPLTHQ  60
GSLMTAGVTS SLPAEVKKTG VPTKQVTSGS SREYSDDDDL DEENETTGSL KPEDVKKSRR  120
MLSNRESARR SRRRKQEQTS DLETQVNELK GEHSTLLKQL SNMNHKYDEA AVGNRILKAD  180
IETLRAKVKM AEETMKRVTG MNPMLLGGSS GHNNNRMPLT GNNRMDFSST IPAFQPHSNL  240
NHMSNPNIGI PTILPPRLGN NFVPPPSLNS QTSSPLQRIR NGQNHHVAPS ANPYGWTTEP  300
QNDSAWPKKC LD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128135RRSRRRKQ
2130135SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.27186s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3102220.0AF310222.1 Arabidopsis thaliana bZIP protein BZO2H1 mRNA, complete cds, alternatively spliced.
GenBankBT0255580.0BT025558.1 Arabidopsis thaliana At4g02640 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877398.10.0basic leucine zipper 10 isoform X1
SwissprotO227631e-175BZP10_ARATH; Basic leucine zipper 10
TrEMBLD7M3F70.0D7M3F7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__3429__AT4G02640.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148711720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02640.21e-178bZIP family protein
Publications ? help Back to Top
  1. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]