PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2637s0021.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 592aa    MW: 64857 Da    PI: 6.8379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2637s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-07101121526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ffa+ G+C  G +CkF H+
  Araha.2637s0021.1.p 101 PCKFFAK-GWCFNGVSCKFLHV 121
                          7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.31496123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-696120IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4101121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSDSDMDIDD DEVEQKVQVH TIVRESELLD KPPIQASHSH NDVKRHSVTT PLDEQSKIIK  60
EQAFAQDNGT LSRFPAPGIP PKSFFPGGEG NEPEQKRAAL PCKFFAKGWC FNGVSCKFLH  120
VKENSNCISQ QLAENSMAGN GGIRSDLERR ILDSKEGVRF SQLSENGVTS LHTRNDISFV  180
NPPGSQRVFS SMSFVNPPGS QRVFPFSNEM RFMPSFENIG RESLKQTYVA DVTDNRSLVI  240
NNSNSFTLRS SFVHEHRPSI SSYLKTDMGS SGPAWTASLS SSVPMKERAS TVGHFENGNN  300
ISGSGSLPTL QGIAVSSDKG AEGNTTSTKK KVSSDDWEPS EPFKASFTIP PYILPSSDAL  360
YDPFTDIENL GDRSLNGSLS SKGEHARKNS RQQKDGDSAS GPEARECKND DKSSSCSQNQ  420
HQETVARRSL EAHGVVEGVA TSVVDQNDAT TPSKEISSAA AAENRVVLKR SKPAGHDSWH  480
RSDGSSYKKT MKSDEIDGEV RSDAGMKVMR QFRTAVVETV KEMLKPLWRE GRLTKDVHNM  540
IVKKAAEKVV SAAVQFHQVP TDTESVDQYL GLSATRIVKL VEGYVEKYGK P*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2637s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288660.0AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881309.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLD7LGF20.0D7LGF2_ARALL; Frigida-essential 1
STRINGscaffold_401971.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]