PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2637s0011.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 422aa MW: 48860.2 Da PI: 7.2666

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2637s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61	3.6e-19	113	195	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ k+ ++++++ +vCsk+g+r+e k ++ +++ tr+gC+a+++ ++k+gk++v ++e +HnH+l+ Araha.2637s0011.1.p 113 YKKYGGNHGFNVRKQRRMKK--KEKVVRLLYVCSKQGYRKEPKVI---KSYSQPITRCGCNAHITCYLQKTGKYKVVSFEPNHNHDLV 195 9**********9987776..7779***********9877...999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-16	113	195	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-28	277	360	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
RSGVQVLDNA PFARILHRKR SVHQEYEEEG EGGVVCRESN KVRKELSVEE DDSINEDEAS 60 VNEFEEEDEI ANNEDDVQTE EAAALEANND NEKKDEIYVG MKFSSDEIAH ITYKKYGGNH 120 GFNVRKQRRM KKKEKVVRLL YVCSKQGYRK EPKVIKSYSQ PITRCGCNAH ITCYLQKTGK 180 YKVVSFEPNH NHDLVRTPMK HLLKGNRVLS ISQKQHADDA EMSGISAKST VEMMSREVGG 240 RVNLGFLKKD YQNYIYRKQM AKMEKGDAGA VLEYFQKKKR TLAPFVGVNH HKQTVVFGDA 300 FLYDETTESY KWLFETFLGA MSGKQPKTIL TDQCAAMANA IVKVFPDTKH RLCVWHIYQN 360 DTKKLSHVFH GAEQFAMDFS KCVYDHEEEE EWLLAWSNML EKHKLTEDKW LKNLFELREN 420 GQ

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

RSGVQVLDNA PFARILHRKR SVHQEYEEEG EGGVVCRESN KVRKELSVEE DDSINEDEAS  60
VNEFEEEDEI ANNEDDVQTE EAAALEANND NEKKDEIYVG MKFSSDEIAH ITYKKYGGNH  120
GFNVRKQRRM KKKEKVVRLL YVCSKQGYRK EPKVIKSYSQ PITRCGCNAH ITCYLQKTGK  180
YKVVSFEPNH NHDLVRTPMK HLLKGNRVLS ISQKQHADDA EMSGISAKST VEMMSREVGG  240
RVNLGFLKKD YQNYIYRKQM AKMEKGDAGA VLEYFQKKKR TLAPFVGVNH HKQTVVFGDA  300
FLYDETTESY KWLFETFLGA MSGKQPKTIL TDQCAAMANA IVKVFPDTKH RLCVWHIYQN  360
DTKKLSHVFH GAEQFAMDFS KCVYDHEEEE EWLLAWSNML EKHKLTEDKW LKNLFELREN  420
GQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2637s0011.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002983	0.0	AC002983.1 Arabidopsis thaliana BAC T3F12 from chromosome IV near 24 cM, complete sequence.
GenBank	AL161512	0.0	AL161512.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 24.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456530.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	R0EZH3	0.0	R0EZH3_9BRAS; Uncharacterized protein
STRING	XP_006281824.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-54	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Araha.2637s0011.1.p