PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2632s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 625aa MW: 68020.6 Da PI: 5.3745 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.6e-06 | 357 | 377 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f G+C++Gd+C F+H Araha.2632s0004.1.p 357 PCNNFITKGFCHRGDSCLFSH 377 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.939 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 302 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.99 | 327 | 354 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0017 | 327 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7 | 355 | 379 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 356 | 381 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.789 | 357 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
IAQASPGETY EPPENLSTVE SKSNGVTGDL RCEKVETNSQ EKSLMLGDVF DGIDLQDASV 60 GSRHTDFFDS FELMINENQD FVPDSCVNLF EALNVNDYDG NGMVASLDDI AKQPLDIVEN 120 VVEKLNIESE VQVDPVGGDK KAEEVPKSVE SNEVRSSGVL EACDETVQRE MELEKPVDSS 180 QVLVDSVSRI VEHDDVEEGE ISGDDNDDML VGDDEPVERH EESQVSRDGI GNSHLTSHES 240 FGKELGVEMD PGTSIKKRSA PSKDAKARKR AKARKKRAQE RIALGVKKLK LKPVAPKPKP 300 IKYCRHYLKG RCHEGDKCKF SHDTTPETKS SPCCYFATQS CMKGDDCPFD HDLSKYPCNN 360 FITKGFCHRG DSCLFSHKGT PQSASDTPSA NVTASSTNIT TASFSPQKTN KQSVREAIAK 420 LPGIQARVSS SVGFLKPLSH SNQRNSSDAS SPKINELVTP PQVPPLRKPS VAPKGMSFLS 480 LDKTSQEDTV KPSPASKPNT DNPDNQTLKQ SQQGSSLPLV PPKGISFLSF ASEEPKTLNR 540 EPQEPSSSRN LKTTPSSHIQ SSLLSAMKLA AEFESAKVER RNNDPTEAVN KSNVTTVNTT 600 VTRNSGNISS KILEFLSSFS QGKN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 255 | 276 | KKRSAPSKDAKARKRAKARKKR |
2 | 266 | 272 | ARKRAKA |
3 | 267 | 289 | RKRAKARKKRAQERIALGVKKLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2632s0004.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024035 | 0.0 | AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866173.1 | 0.0 | zinc finger CCCH domain-containing protein 65 | ||||
Swissprot | Q9LTS7 | 0.0 | C3H65_ARATH; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | D7MM85 | 0.0 | D7MM85_ARALL; EMB1789 | ||||
STRING | scaffold_802252.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12160 | 15 | 16 |
Link Out ? help Back to Top | |
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Phytozome | Araha.2632s0004.1.p |