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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.26186s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27626.4 Da PI: 5.4617 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.2 | 3.8e-12 | 11 | 59 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50 i ++ r+ ++ +R++ ++KK +ELS+LCd+ +++++f ++++l ++ Araha.26186s0007.1.p 11 IRDYKTRKSSLKRRLTSLMKKVNELSILCDMPASLVVFNrEENQLAAWP 59 789999*******************************973567888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.227 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-9 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.89E-19 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 4.58E-18 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-11 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MARKKAPLAW IRDYKTRKSS LKRRLTSLMK KVNELSILCD MPASLVVFNR EENQLAAWPS 60 PEAAKSLIDK FYSLTDHERT MKAIDPESYV QTNIEKIEKK LADTRKVITE LEMEHLMFDL 120 QNGRELANLS PTEVDKLISY SGKKLMCLSK QMGSTVDHEA LRASNVASGS GGNGFNMMGT 180 GRSFYYVDKW VFVDPQVQKP CDDETHLPTM VTGLDLNMEP SDDVDKDLGT YKGESSKAAG 240 AEDDSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.26186s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002543 | 0.0 | AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ056672 | 0.0 | DQ056672.1 Arabidopsis thaliana MADS-box family protein (At5g06500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879043.1 | 1e-173 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A178ULF5 | 1e-140 | A0A178ULF5_ARATH; AGL96 | ||||
TrEMBL | Q9FG20 | 1e-140 | Q9FG20_ARATH; AGAMOUS-like 96 | ||||
STRING | AT5G06500.1 | 1e-141 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 1e-129 | AGAMOUS-like 96 |
Link Out ? help Back to Top | |
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Phytozome | Araha.26186s0007.1.p |