PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.25051s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 736aa    MW: 83700.8 Da    PI: 6.2121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.25051s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-13424468146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r+ WT eEd++l  av ++G  +W ++a+ ++ gRt+ qc +rw k
  Araha.25051s0004.1.p 424 RKEWTSEEDDQLRAAVDLFGESDWQSVANILQ-GRTGPQCSNRWKK 468
                           789*****************************.***********98 PP
2Myb_DNA-binding51.13e-16477519144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           + +W+ eEd++l+ av+++G+++W++Ia+ ++ gRt+ qc +rw
  Araha.25051s0004.1.p 477 KRNWSSEEDKRLKVAVTLFGTKNWRKIAQFVP-GRTGTQCLERW 519
                           569*****************************.*********** PP
3Myb_DNA-binding42.21.9e-13530572246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g+WT+eEd +l +a k++G   W+++a+ m   Rt+ qc  rw +
  Araha.25051s0004.1.p 530 GKWTKEEDAKLREAMKEHGYC-WSKVASDMS-CRTDSQCARRWKS 572
                           79*****************99.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.972272361IPR017877Myb-like domain
SMARTSM0071714276367IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-4279295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-4341377IPR009057Homeodomain-like
SuperFamilySSF466891.48E-11349415IPR009057Homeodomain-like
PROSITE profilePS500907.735366418IPR017877Myb-like domain
SMARTSM007175.4E-6370420IPR001005SANT/Myb domain
CDDcd001670.00197373418No hitNo description
Gene3DG3DSA:1.10.10.603.8E-12378425IPR009057Homeodomain-like
SuperFamilySSF466891.86E-19403472IPR009057Homeodomain-like
PROSITE profilePS5129421.86419474IPR017930Myb domain
SMARTSM007171.3E-12423472IPR001005SANT/Myb domain
PfamPF002495.0E-12424468IPR001005SANT/Myb domain
CDDcd001671.08E-9426470No hitNo description
Gene3DG3DSA:1.10.10.606.6E-16426472IPR009057Homeodomain-like
SuperFamilySSF466894.93E-26474570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-18474524IPR009057Homeodomain-like
PROSITE profilePS5129415.953475523IPR017930Myb domain
SMARTSM007171.5E-14476525IPR001005SANT/Myb domain
PfamPF002494.4E-14477520IPR001005SANT/Myb domain
CDDcd001671.81E-11479523No hitNo description
PROSITE profilePS5129423.242524578IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-16525573IPR009057Homeodomain-like
SMARTSM007172.3E-11528576IPR001005SANT/Myb domain
PfamPF002493.7E-12530573IPR001005SANT/Myb domain
CDDcd001671.50E-9531573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MNREGLYEVD DDDDDDDDIG EDLEELRQAF IVTEAKGLPS DSENDEEDDL EMLRSIKSQL  60
ASSTTNVGLS VPSDSESEND FEMLRSIKSQ LALSMDEDED EDGAFETLGA IRRRFFAYEN  120
FDHGKSAVTV PDSETSIEQL DHLETCQSSL MPATSSGFPE AALAFVDAIR KNRLYQSFLR  180
RKLSEIEATI EQNEKHRKNV KIVKDFQASC KRITKQALSQ GKDPRVELIS TPKSRPASDS  240
FGGNDKKTSY LTMGPPENAC VANYRMALEK YPVSVDRANW TTKEKENLAK GLKQQVQDTL  300
IREAFERSSD LEGSADDINT ILEGIKSLEI TPEMIRQFLP KANWDQLDIK NRSAAECEAR  360
WMSSDDSLIN NGPWTVAEDN YIRLITKTKG FTDWLDIAVS LGTNRTPFQC LARYQRSLNP  420
DILRKEWTSE EDDQLRAAVD LFGESDWQSV ANILQGRTGP QCSNRWKKSL HPSRTRKRNW  480
SSEEDKRLKV AVTLFGTKNW RKIAQFVPGR TGTQCLERWG NSLDPKLKFG KWTKEEDAKL  540
REAMKEHGYC WSKVASDMSC RTDSQCARRW KSLYPHLAHL RQEARRLQKE ATIGNFVDRE  600
SERPDRVVGD FLALAEISLE PEEPVLTKKR KPRQTKKADT ECKSEAVCAD TERQPKKQRK  660
GLERCSGDVC RKENEKTEDN VKEKKQRRKR TSVAGTSNNS SVTTNCPHVK IGIQKLKPRR  720
KVSALVPIEN LDAQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-293335729159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-293335729159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.25051s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867927.10.0snRNA-activating protein complex subunit 4
TrEMBLD7MG960.0D7MG96_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70019620.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1