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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.24929s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29850.2 Da PI: 9.9704 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 26 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed+ l + v+q+G+++W+ Ia+++ gR++k+c++rw++ Araha.24929s0003.1.p 26 RGHWRPVEDDNLRQFVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 71 899****************************9.************96 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l++a++ G++ W++Iar ++ gRt++ +k++++ Araha.24929s0003.1.p 78 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 121 689*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.773 | 21 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-29 | 24 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 25 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-25 | 27 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.3E-16 | 29 | 89 | No hit | No description |
CDD | cd00167 | 1.37E-12 | 29 | 70 | No hit | No description |
SMART | SM00717 | 1.5E-14 | 77 | 125 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.448 | 77 | 127 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 80 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.26E-11 | 80 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEIEIASMEM SRGSNSFDNK KPSCQRGHWR PVEDDNLRQF VEQYGPKNWN FIAQHLYGRS 60 GKSCRLRWYN QLDPNITKKP FTEEEEERLL KAHRIQGNRW ASIARLFPGR TDNAVKNHFH 120 VIMARRKREN FSSTATSTFN QTWHNVLSPS SSITRLNRSQ FGLWRYRKDK SHGLWPYSFV 180 SAPINDQFGS SSVSNVRHEI YLERRKSKEL VDDHNYTFHA ATPDHKKTSN EDGPSIGDDG 240 EKNNVTFIDF LGVGLAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-34 | 22 | 126 | 3 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.24929s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY142517 | 0.0 | AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds. | |||
GenBank | AY519611 | 0.0 | AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002867181.1 | 0.0 | transcription factor MYB3R-3 | ||||
TrEMBL | D7M8R2 | 0.0 | D7M8R2_ARALL; AtMYB69 | ||||
STRING | fgenesh1_pg.C_scaffold_7000654 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10133 | 20 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33450.1 | 0.0 | myb domain protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Araha.24929s0003.1.p |