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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araha.24544s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
M-type_MADS |
Protein Properties |
Length: 193aa MW: 22327.6 Da PI: 10.2128 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.24544s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 80.3 | 1.3e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ +++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++
Araha.24544s0001.1.p 10 SCSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 59
6789********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 193 aa
Download sequence Send
to blast |
MTMRSLPSSS CSSYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE 60 REKVRDIALR YSQLNEALRR KKRVNLYDFL NKKKNKGLKN PNKKRKMSLK KVNELKYPIS 120 DHYSPDQISK LIQSLELNVS KVRERLRFVE SQKQNETKPD HQGLASTSLN QQTQSLNPSQ 180 FSLFMYNHGD NTL
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 91 | 105 | KKKNKGLKNPNKKRK |
2 | 92 | 104 | KKNKGLKNPNKKR |
3 | 97 | 105 | LKNPNKKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB010699 | 0.0 | AB010699.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9. |
GenBank | AY141223 | 0.0 | AY141223.1 Arabidopsis thaliana MADS-box protein AGL43 mRNA, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |