PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 22327.6 Da PI: 10.2128

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.24544s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.3	1.3e-25	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + +++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++ Araha.24544s0001.1.p 10 SCSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 59 6789********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-4	1	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-14	18	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.601	19	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-16	19	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.39E-17	19	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MTMRSLPSSS CSSYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE 60 REKVRDIALR YSQLNEALRR KKRVNLYDFL NKKKNKGLKN PNKKRKMSLK KVNELKYPIS 120 DHYSPDQISK LIQSLELNVS KVRERLRFVE SQKQNETKPD HQGLASTSLN QQTQSLNPSQ 180 FSLFMYNHGD NTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	105	KKKNKGLKNPNKKRK
2	92	104	KKNKGLKNPNKKR
3	97	105	LKNPNKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.24544s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010699	0.0	AB010699.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9.
GenBank	AY141223	0.0	AY141223.1 Arabidopsis thaliana MADS-box protein AGL43 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872955.1	1e-118	agamous-like MADS-box protein AGL75
Swissprot	Q9FIX0	2e-97	AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBL	D7MJH9	1e-117	D7MJH9_ARALL; Uncharacterized protein
TrEMBL	D7MJI6	1e-117	D7MJI6_ARALL; Predicted protein
STRING	Al_scaffold_0007_3741	1e-117	(Arabidopsis lyrata)
STRING	scaffold_704060.1	1e-118	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39750.1	2e-93	AGAMOUS-like 81

Link Out ? help Back to Top
Phytozome	Araha.24544s0001.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]