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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.24359s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40713.8 Da PI: 6.0243 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.7 | 4.1e-48 | 33 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l pGfrF Ptd el+++yL++k++g++ ++ vi+ev+iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++rat+ gyWkatgk Araha.24359s0001.1.p 33 LFPGFRFCPTDVELISYYLRRKIDGDEDSV-AVIAEVEIYKFEPWDLPeESKLKSENEWFYFCARGRKYPHGSQSRRATRLGYWKATGK 120 579************************999.89***************433334678******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++v+s ++++vg k+tLvf+ grap+ge+t+W+mhey + Araha.24359s0001.1.p 121 ERTVKS-GNQDVGSKRTLVFHIGRAPRGERTEWIMHEYCI 159 *****9.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-54 | 22 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.591 | 33 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-24 | 35 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MFLHLKQSIF EFLNQKDQTM SKEAEMSIAV SALFPGFRFC PTDVELISYY LRRKIDGDED 60 SVAVIAEVEI YKFEPWDLPE ESKLKSENEW FYFCARGRKY PHGSQSRRAT RLGYWKATGK 120 ERTVKSGNQD VGSKRTLVFH IGRAPRGERT EWIMHEYCIH GAPQDALVVC RLRKNADFRA 180 SSSQKQMEDG VVQDDGYVGQ TGGSEKEEKS YSVYDQLPNG DIAESSNVVE EQADTDDDCY 240 AEILNDDIIK LDEEALKASQ AFRPTNPTHQ ETISSESSSK RSKCGIKKES TETMNSYALF 300 RIKNVAGTDS SWRFPNPFNI KKDYSQILMK KVLATTVFLA ILFSFFWTVL IARNYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-42 | 32 | 185 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-42 | 32 | 185 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-42 | 32 | 185 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-42 | 32 | 185 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-42 | 32 | 185 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-42 | 32 | 185 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-42 | 32 | 185 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.24359s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT028934 | 0.0 | BT028934.1 Arabidopsis thaliana At2g27300 mRNA, complete cds. | |||
GenBank | DQ056544 | 0.0 | DQ056544.1 Arabidopsis thaliana no apical meristem family protein (At2g27300) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880904.2 | 0.0 | LOW QUALITY PROTEIN: NAC domain-containing protein 40 | ||||
Swissprot | Q9XIN7 | 0.0 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | D7LGW0 | 0.0 | D7LGW0_ARALL; ANAC040 | ||||
STRING | fgenesh2_kg.4__689__AT2G27300.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10453 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 0.0 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Araha.24359s0001.1.p |
Publications ? help Back to Top | |||
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