PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.23810s0006.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 461aa MW: 51144.6 Da PI: 7.1886

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.23810s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	161	189	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Araha.23810s0006.1.p 161 KTLRRLAQNREAARKSRLRKKAYVQQLES 189 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-9	152	205	No hit	No description
SMART	SM00338	5.0E-7	157	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	159	203	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-7	161	202	No hit	No description
CDD	cd14708	1.58E-22	161	213	No hit	No description
Pfam	PF00170	9.6E-8	161	191	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	164	179	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-30	254	328	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MQGHHQNHHQ QHLSSSSATS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPSPL 60 PHHHHTTQNL AMRPPSTLNI FPSQPMHIEP PPSSTHNTDS TRLVPAAQPS GSTRPSSDPS 120 MDLTNHSQFQ TPQASKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK 180 KAYVQQLESC RIKLTQLEQE IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD 240 MEYARWLEEQ QRLLNELRVA TQEHLAENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI 300 SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL 360 EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK LSALEGFVLQ ADNLRHQTIH 420 RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MQGHHQNHHQ QHLSSSSATS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPSPL  60
PHHHHTTQNL AMRPPSTLNI FPSQPMHIEP PPSSTHNTDS TRLVPAAQPS GSTRPSSDPS  120
MDLTNHSQFQ TPQASKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK  180
KAYVQQLESC RIKLTQLEQE IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD  240
MEYARWLEEQ QRLLNELRVA TQEHLAENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI  300
SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL  360
EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK LSALEGFVLQ ADNLRHQTIH  420
RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG *

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.23810s0006.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878980.1	0.0	transcription factor TGA10 isoform X2
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A1J3I3I6	0.0	A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1)
STRING	Cagra.8005s0020.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Araha.23810s0006.1.p

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]